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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146786 (39 seq.)
>W1711079174
LSNW01000030
Gammaproteobacteria
Methylothermaceae bacteria B42 [LSNW]
9791
9867
+
Arg
CCG
[ENA]
¡û
>W1711129662
LUUF01000073
Gammaproteobacteria
Methylomonas methanica [LUUF]
161308
161384
+
Arg
CCG
[ENA]
¡û
>W1711129715
LUUG01000129
Gammaproteobacteria
Methylomonas methanica [LUUG]
3107
3031
-
Arg
CCG
[ENA]
¡û
>W1711129744
LUUH01000062
Gammaproteobacteria
Methylomonas methanica [LUUH]
36796
36872
+
Arg
CCG
[ENA]
¡û
>W1711129839
LUUJ01000124
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
1609
1533
-
Arg
CCG
[ENA]
¡û
>W1711129882
LUUK01000197
Gammaproteobacteria
Methylomonas koyamae [LUUK]
63286
63362
+
Arg
CCG
[ENA]
¡û
>W1711129915
LUUL01000080
Gammaproteobacteria
Methylomonas koyamae [LUUL]
46682
46606
-
Arg
CCG
[ENA]
¡û
>W1711494863
MKMC01000034
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
124421
124497
+
Arg
CCG
[ENA]
¡û
>W131173947
ARIB01000015
Gammaproteobacteria
Thioalkalivibrio sp. ALJ10 [ARIB]
291354
291430
+
Arg
CCG
[ENA]
¡û
>W131178828
ARLW01000017
Gammaproteobacteria
Thioalkalivibrio sp. ALE22 [ARLW]
68272
68196
-
Arg
CCG
[ENA]
¡û
>W131179651
ARMO01000012
Gammaproteobacteria
Thioalkalivibrio sp. ARh5 [ARMO]
68510
68586
+
Arg
CCG
[ENA]
¡û
>W131155787
AQOV01000002
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
154356
154280
-
Arg
CCG
[ENA]
¡û
>W131186009
ARVS01000002
Gammaproteobacteria
Methylobacter marinus A45 [ARVS]
754956
755032
+
Arg
CCG
[ENA]
¡û
>W131219236
ATYJ01000003
Gammaproteobacteria
Methylobacter luteus IMV-B-3098 [ATYJ]
378383
378307
-
Arg
CCG
[ENA]
¡û
>WENV181144327
OEHO01004040
[OEHO] metagenome; unknown
585
509
-
Arg
CCG
[ENA]
¢þ
>W141219918
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
1533163
1533239
+
Arg
CCG
[ENA]
¡û
>WENV170577489
FSSH01000063
[FSSH] freshwater metagenome; drinking water
248587
248663
+
Arg
CCG
[ENA]
¢þ
>WENV170577959
FSSH01003770
[FSSH] freshwater metagenome; drinking water
4282
4358
+
Arg
CCG
[ENA]
¢þ
>WENV170824441
MDSY01076055
[MDSY] marine metagenome; seawater
9346
9422
+
Arg
CCG
[ENA]
¢þ
>C181088670
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
4870796
4870872
+
Arg
CCG
-
¡û
>C191105449
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
529473
529397
-
Arg
CCG
-
¡û
>W141733698
JNLB01000002
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
1135
1059
-
Arg
CCG
[ENA]
¡û
>W141807566
JPON01000001
Gammaproteobacteria
Methylomarinum vadi [JPON]
3872668
3872592
-
Arg
CCG
[ENA]
¡û
>W141817430
JQKS01000002
Gammaproteobacteria
Methylobacter sp. BBA5.1 [JQKS]
8495
8571
+
Arg
CCG
[ENA]
¡û
>W141821715
JQNS01000005
Gammaproteobacteria
Methylobacter whittenburyi [JQNS]
629861
629785
-
Arg
CCG
[ENA]
¡û
>W1910377342
FUKI01000092
Gammaproteobacteria
Crenothrix polyspora [FUKI]
22841
22917
+
Arg
CCG
[ENA]
¡û
>W1810154908
PIZT01000001
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
142298
142222
-
Arg
CCG
[ENA]
¡û
>C11114730
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
3684141
3684217
+
Arg
CCG
[Ensembl]
¡û
>C161072120
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
4824771
4824847
+
Arg
CCG
[Ensembl]
¡û
>C161072428
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
1622053
1622129
+
Arg
CCG
[Ensembl]
¡û
>W1610918084
LSNW01000030
Gammaproteobacteria
Methylothermaceae bacteria B42 [LSNW]
9791
9867
+
Arg
CCG
[ENA]
¡û
>W1610940735
LUUF01000073
Gammaproteobacteria
Methylomonas methanica [LUUF]
161308
161384
+
Arg
CCG
[ENA]
¡û
>W1610940788
LUUG01000129
Gammaproteobacteria
Methylomonas methanica [LUUG]
3107
3031
-
Arg
CCG
[ENA]
¡û
>W1610940817
LUUH01000062
Gammaproteobacteria
Methylomonas methanica [LUUH]
36796
36872
+
Arg
CCG
[ENA]
¡û
>W1610940912
LUUJ01000124
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
1609
1533
-
Arg
CCG
[ENA]
¡û
>W1610940955
LUUK01000197
Gammaproteobacteria
Methylomonas koyamae [LUUK]
63286
63362
+
Arg
CCG
[ENA]
¡û
>W1610940988
LUUL01000080
Gammaproteobacteria
Methylomonas koyamae [LUUL]
46682
46606
-
Arg
CCG
[ENA]
¡û
>WENV077910
AAFX01123626
Soil microbial communities from Minnesota Farm
570
492
-
Arg
CCG
[ENA]
>W1710569156
FOUE01000001
Gammaproteobacteria
Marinobacter zhejiangensis [FOUE]
1075314
1075238
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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