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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146802 (62 seq.)
>W1711338602
MBTF01000012
Bacteroidota
Mucilaginibacter pedocola [MBTF]
169516
169440
-
Pro
TGG
[ENA]
¡û
>W1711338603
MBTF01000012
Bacteroidota
Mucilaginibacter pedocola [MBTF]
169350
169274
-
Pro
TGG
[ENA]
¡û
>W1711338604
MBTF01000012
Bacteroidota
Mucilaginibacter pedocola [MBTF]
169184
169108
-
Pro
TGG
[ENA]
¡û
>W1711338605
MBTF01000012
Bacteroidota
Mucilaginibacter pedocola [MBTF]
169018
168942
-
Pro
TGG
[ENA]
¡û
>W1711360566
MDJS01000001
Bacteroidota
Mucilaginibacter sp. PPCGB 2223 [MDJS]
244480
244406
-
Pro
TGG
[ENA]
¡û
>W1711503542
MKTS01000001
Bacteroidota
Mucilaginibacter sp. 44-25 [MKTS]
318759
318835
+
Pro
TGG
[ENA]
¡û
>W1711629946
MPPL01000001
Bacteroidota
Mucilaginibacter polytrichastri [MPPL]
5042409
5042333
-
Pro
TGG
[ENA]
¡û
>W1711629961
MPPL01000001
Bacteroidota
Mucilaginibacter polytrichastri [MPPL]
1507774
1507700
-
Pro
TGG
[ENA]
¡û
>WENV180099549
NMRC01016342
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
285
211
-
Pro
TGG
[ENA]
¢þ
>WENV181145641
OEHO01371095
[OEHO] metagenome; unknown
131
57
-
Pro
TGG
[ENA]
¢þ
>W141222943
BACV01000480
Bacteroidota
Cytophagales bacterium B6 B6 [BACV]
5839
5915
+
Pro
TGG
[ENA]
¡û
>W141222944
BACV01000480
Bacteroidota
Cytophagales bacterium B6 B6 [BACV]
6007
6083
+
Pro
TGG
[ENA]
¡û
>WENV183092167
OLKV01000118
[OLKV] soil metagenome; soil
9195
9269
+
Pro
TGG
[ENA]
¢þ
>WENV170011746
APMI01087448
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
588
664
+
Pro
TGG
[ENA]
¢þ
>WENV170011859
APMI01097311
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2063
1987
-
Pro
TGG
[ENA]
¢þ
>WENV170990759
MWWA01040749
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
652
726
+
Pro
TGG
[ENA]
¢þ
>C181071988
CP022743
Bacteroidota
Mucilaginibacter xinganensis BJC16-A31 [CP022743]
2424687
2424761
+
Pro
TGG
-
¡û
>C181072013
CP022743
Bacteroidota
Mucilaginibacter xinganensis BJC16-A31 [CP022743]
746892
746818
-
Pro
TGG
-
¡û
>C191096566
CP032869
Bacteroidota
Mucilaginibacter celer HYN0043 [CP032869]
3311969
3311895
-
Pro
TGG
-
¡û
>C191096567
CP032869
Bacteroidota
Mucilaginibacter celer HYN0043 [CP032869]
3311799
3311725
-
Pro
TGG
-
¡û
>W1910664195
MBTA01000023
Bacteroidota
Pelobium manganitolerans YS-25 [MBTA]
250736
250662
-
Pro
TGG
[ENA]
¡û
>W1911219793
NRSW01000001
Bacteroidota
Mucilaginibacter sp. MD40 [NRSW]
2333150
2333224
+
Pro
TGG
[ENA]
¡û
>W1911747205
QWDC01000003
Bacteroidota
Mucilaginibacter conchicola MYSH2 [QWDC]
496217
496291
+
Pro
TGG
[ENA]
¡û
>W1810090296
PGFJ01000001
Bacteroidota
Mucilaginibacter auburnensis DSM 28175 [PGFJ]
1826347
1826421
+
Pro
TGG
[ENA]
¡û
>W1810477219
QAOQ01000003
Bacteroidota
Mucilaginibacter yixingensis DSM 26809 [QAOQ]
608274
608200
-
Pro
TGG
[ENA]
¡û
>W1810477222
QAOQ01000004
Bacteroidota
Mucilaginibacter yixingensis DSM 26809 [QAOQ]
248302
248376
+
Pro
TGG
[ENA]
¡û
>W1810477223
QAOQ01000004
Bacteroidota
Mucilaginibacter yixingensis DSM 26809 [QAOQ]
248815
248889
+
Pro
TGG
[ENA]
¡û
>W1810584249
QEYR01000063
Bacteroidota
Mucilaginibacter rubeus P1 [QEYR]
76303
76377
+
Pro
TGG
[ENA]
¡û
>W1810584255
QEYR01000088
Bacteroidota
Mucilaginibacter rubeus P1 [QEYR]
16019
15945
-
Pro
TGG
[ENA]
¡û
>W1810587325
QFKW01000002
Bacteroidota
Mucilaginibacter rubeus P2 [QFKW]
15955
15881
-
Pro
TGG
[ENA]
¡û
>W1810587353
QFKW01000042
Bacteroidota
Mucilaginibacter rubeus P2 [QFKW]
4270
4196
-
Pro
TGG
[ENA]
¡û
>W1810594606
QGDC01000002
Bacteroidota
Mucilaginibacter hurinus ZR32 [QGDC]
105171
105245
+
Pro
TGG
[ENA]
¡û
>W1810597097
QGHA01000003
Bacteroidota
Mucilaginibacter oryzae DSM 19975 [QGHA]
368549
368475
-
Pro
TGG
[ENA]
¡û
>W1810597098
QGHA01000003
Bacteroidota
Mucilaginibacter oryzae DSM 19975 [QGHA]
368381
368307
-
Pro
TGG
[ENA]
¡û
>W1810676200
QKLV01000007
Bacteroidota
Mucilaginibacter sp. OV119 [QKLV]
211113
211039
-
Pro
TGG
[ENA]
¡û
>W1810676201
QKLV01000007
Bacteroidota
Mucilaginibacter sp. OV119 [QKLV]
210943
210869
-
Pro
TGG
[ENA]
¡û
>W1810753589
QPCG01000001
Bacteroidota
Mucilaginibacter endophyticus RS1 [QPCG]
1641748
1641822
+
Pro
TGG
[ENA]
¡û
>W1810753590
QPCG01000001
Bacteroidota
Mucilaginibacter endophyticus RS1 [QPCG]
1641918
1641992
+
Pro
TGG
[ENA]
¡û
>W1810753591
QPCG01000001
Bacteroidota
Mucilaginibacter endophyticus RS1 [QPCG]
1642088
1642162
+
Pro
TGG
[ENA]
¡û
>W1810917768
QWDE01000001
Bacteroidota
Mucilaginibacter terrenus ZH6 [QWDE]
479912
479986
+
Pro
TGG
[ENA]
¡û
>W11138397
AEIH01000084
Bacteroidota
Mucilaginibacter paludis DSM 18603 [AEIH]
3406
3482
+
Pro
TGG
[ENA]
¡û
>W11138398
AEIH01000084
Bacteroidota
Mucilaginibacter paludis DSM 18603 [AEIH]
52924
53000
+
Pro
TGG
[ENA]
¡û
>C161077158
CP014773
Bacteroidota
Mucilaginibacter sp. PAMC 26640 [CP014773]
3316495
3316571
+
Pro
TGG
[Ensembl]
¡û
>W1610612090
LGEK01000077
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
5620
5546
-
Pro
TGG
[ENA]
¡û
>W1710505636
FMTV01000002
Bacteroidota
Mucilaginibacter sp. NFR10 [FMTV]
278627
278703
+
Pro
TGG
[ENA]
¡û
>W1710505637
FMTV01000002
Bacteroidota
Mucilaginibacter sp. NFR10 [FMTV]
278801
278877
+
Pro
TGG
[ENA]
¡û
>W1710513659
FNAI01000003
Bacteroidota
Mucilaginibacter pineti [FNAI]
158064
158140
+
Pro
TGG
[ENA]
¡û
>W1710515987
FNCG01000001
Bacteroidota
Mucilaginibacter gossypii [FNCG]
279016
279092
+
Pro
TGG
[ENA]
¡û
>W1710515988
FNCG01000001
Bacteroidota
Mucilaginibacter gossypii [FNCG]
279185
279261
+
Pro
TGG
[ENA]
¡û
>W1710525862
FNJV01000002
Bacteroidota
Mucilaginibacter sp. OK268 [FNJV]
180921
180847
-
Pro
TGG
[ENA]
¡û
>W1710525887
FNJV01000014
Bacteroidota
Mucilaginibacter sp. OK268 [FNJV]
131457
131533
+
Pro
TGG
[ENA]
¡û
>W1710546807
FOCL01000003
Bacteroidota
Mucilaginibacter gossypiicola [FOCL]
340657
340581
-
Pro
TGG
[ENA]
¡û
>W1710546808
FOCL01000003
Bacteroidota
Mucilaginibacter gossypiicola [FOCL]
340487
340411
-
Pro
TGG
[ENA]
¡û
>W1710548319
FODR01000006
Bacteroidota
Mucilaginibacter sp. OK283 [FODR]
233319
233395
+
Pro
TGG
[ENA]
¡û
>W1710548320
FODR01000006
Bacteroidota
Mucilaginibacter sp. OK283 [FODR]
233624
233700
+
Pro
TGG
[ENA]
¡û
>W1710577023
FPAM01000002
Bacteroidota
Mucilaginibacter polytrichastri [FPAM]
269360
269434
+
Pro
TGG
[ENA]
¡û
>W1710577033
FPAM01000007
Bacteroidota
Mucilaginibacter polytrichastri [FPAM]
37302
37226
-
Pro
TGG
[ENA]
¡û
>W1710592443
FRCM01000001
Bacteroidota
Mucilaginibacter sp. OK098 [FRCM]
308760
308836
+
Pro
TGG
[ENA]
¡û
>W1710592482
FRCM01000009
Bacteroidota
Mucilaginibacter sp. OK098 [FRCM]
347256
347182
-
Pro
TGG
[ENA]
¡û
>W1710595924
FTMG01000001
Bacteroidota
Mucilaginibacter lappiensis [FTMG]
902435
902361
-
Pro
TGG
[ENA]
¡û
>W1710595931
FTMG01000002
Bacteroidota
Mucilaginibacter lappiensis [FTMG]
161865
161789
-
Pro
TGG
[ENA]
¡û
>W1710733596
LGEK01000077
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
5620
5546
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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