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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146818 (77 seq.)
>W1711501737
MKRY01000213
Alphaproteobacteria
Brevundimonas sp. 67-6 [MKRY]
2260
2184
-
Met
CAT
[ENA]
¡û
>W1711718098
MTHE01000002
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
129666
129590
-
Met
CAT
[ENA]
¡û
>W1712106170
NIVP01000002
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
291255
291331
+
Met
CAT
[ENA]
¡û
>W131218283
ATXN01000007
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
72995
72919
-
Met
CAT
[ENA]
¡û
>WENV180015756
FSTD01000409
[FSTD] metagenome; soil
192
116
-
Met
CAT
[ENA]
¢þ
>WENV180015789
FSTG01000168
[FSTG] metagenome; soil
3497
3421
-
Met
CAT
[ENA]
¢þ
>WENV180016332
FSUR01000134
[FSUR] metagenome; soil
546
470
-
Met
CAT
[ENA]
¢þ
>WENV180016466
FSVF01000082
[FSVF] metagenome; soil
8253
8177
-
Met
CAT
[ENA]
¢þ
>WENV180018424
FSZA01000109
[FSZA] metagenome; soil
1531
1455
-
Met
CAT
[ENA]
¢þ
>WENV180018932
FTBC01000070
[FTBC] metagenome; soil
6101
6177
+
Met
CAT
[ENA]
¢þ
>WENV180020499
FTCZ01004947
[FTCZ] metagenome; soil
7041
6965
-
Met
CAT
[ENA]
¢þ
>WENV180020836
FTDB01002646
[FTDB] metagenome; soil
5476
5552
+
Met
CAT
[ENA]
¢þ
>WENV180021005
FTDJ01000755
[FTDJ] metagenome; soil
1178
1254
+
Met
CAT
[ENA]
¢þ
>WENV180021007
FTDJ01000818
[FTDJ] metagenome; soil
492
568
+
Met
CAT
[ENA]
¢þ
>WENV180024750
FTIJ01003601
[FTIJ] metagenome; soil
1238
1314
+
Met
CAT
[ENA]
¢þ
>WENV180025788
FTIQ01060494
[FTIQ] metagenome; soil
220
296
+
Met
CAT
[ENA]
¢þ
>WENV180025821
FTIQ01193895
[FTIQ] metagenome; soil
142
66
-
Met
CAT
[ENA]
¢þ
>WENV180026404
FTIT01063796
[FTIT] metagenome; soil
591
515
-
Met
CAT
[ENA]
¢þ
>WENV180027496
FTIZ01001385
[FTIZ] metagenome; soil
5836
5912
+
Met
CAT
[ENA]
¢þ
>WENV180027924
FTIZ01280764
[FTIZ] metagenome; soil
185
261
+
Met
CAT
[ENA]
¢þ
>WENV180027944
FTIZ01327110
[FTIZ] metagenome; soil
26
102
+
Met
CAT
[ENA]
¢þ
>WENV180027973
FTIZ01393419
[FTIZ] metagenome; soil
332
256
-
Met
CAT
[ENA]
¢þ
>WENV180029021
FTJI01004312
[FTJI] metagenome; soil
195
271
+
Met
CAT
[ENA]
¢þ
>WENV180033041
FTKD01100678
[FTKD] metagenome; soil
364
288
-
Met
CAT
[ENA]
¢þ
>WENV180033931
FTKM01001950
[FTKM] metagenome; soil
991322
991398
+
Met
CAT
[ENA]
¢þ
>WENV180034544
FTKR01004640
[FTKR] metagenome; soil
195
271
+
Met
CAT
[ENA]
¢þ
>WENV180035092
FTKT01001339
[FTKT] metagenome; soil
12718
12794
+
Met
CAT
[ENA]
¢þ
>W141043016
AMFA01000122
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
15682
15758
+
Met
CAT
[ENA]
¡û
>W141136728
AWGC01000012
Alphaproteobacteria
Asticcacaulis sp. AC402 [AWGC]
67728
67804
+
Met
CAT
[ENA]
¡û
>W141136763
AWGD01000010
Alphaproteobacteria
Asticcacaulis sp. AC460 [AWGD]
43338
43414
+
Met
CAT
[ENA]
¡û
>W141136805
AWGE01000001
Alphaproteobacteria
Asticcacaulis sp. AC466 [AWGE]
441295
441219
-
Met
CAT
[ENA]
¡û
>W141136846
AWGF01000001
Alphaproteobacteria
Asticcacaulis sp. YBE204 [AWGF]
690766
690690
-
Met
CAT
[ENA]
¡û
>WENV181402274
OFTY01000406
[OFTY] sludge metagenome; sludge
24758
24682
-
Met
CAT
[ENA]
¢þ
>WENV181732621
OGQD01076085
[OGQD] human gut metagenome; faeces
390
314
-
Met
CAT
[ENA]
¢þ
>WENV183696979
OUNJ010000039
[OUNJ] metagenome; soil
4234
4158
-
Met
CAT
[ENA]
¢þ
>WENV183697332
OUNJ010401952
[OUNJ] metagenome; soil
6
82
+
Met
CAT
[ENA]
¢þ
>WENV183697360
OUNJ010519404
[OUNJ] metagenome; soil
1
77
+
Met
CAT
[ENA]
¢þ
>WENV183727505
PJTP01000008
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
69135
69059
-
Met
CAT
[ENA]
¢þ
>WENV183728453
PJTQ01000058
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
150019
150095
+
Met
CAT
[ENA]
¢þ
>WENV183730894
PJTS01001846
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
2248
2172
-
Met
CAT
[ENA]
¢þ
>WENV183733453
PJTY01002235
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
1632
1708
+
Met
CAT
[ENA]
¢þ
>WENV183735420
PJUB01000002
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
458236
458312
+
Met
CAT
[ENA]
¢þ
>WENV183739117
PJUE01001841
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
462
538
+
Met
CAT
[ENA]
¢þ
>WENV183740062
PJUF01000255
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
28537
28461
-
Met
CAT
[ENA]
¢þ
>WENV170565512
FJVW01000417
[FJVW] metagenome; soil
2452
2376
-
Met
CAT
[ENA]
¢þ
>WENV170645994
JQGF01004452
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
191
267
+
Met
CAT
[ENA]
¢þ
>WENV170784150
MCHG01000044
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
68369
68445
+
Met
CAT
[ENA]
¢þ
>C191005622
AP018827
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
2291205
2291129
-
Met
CAT
-
¡û
>C191094025
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
848113
848037
-
Met
CAT
-
¡û
>C191134461
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
533699
533623
-
Met
CAT
-
¡û
>C191157397
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
2259300
2259224
-
Met
CAT
-
¡û
>C191220412
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
78564
78640
+
Met
CAT
-
¡û
>W141551941
JHOF01000024
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
97625
97701
+
Met
CAT
[ENA]
¡û
>W141819010
JQLZ01000001
Alphaproteobacteria
Caulobacter henricii [JQLZ]
555815
555891
+
Met
CAT
[ENA]
¡û
>W141819030
JQLZ01000003
Alphaproteobacteria
Caulobacter henricii [JQLZ]
539948
539872
-
Met
CAT
[ENA]
¡û
>W1910182667
BJNC01000001
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
1850
1774
-
Met
CAT
[ENA]
¡û
>W1910374308
FUIE01000008
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
17475
17551
+
Met
CAT
[ENA]
¡û
>W1911566745
PCPB01000006
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
120353
120429
+
Met
CAT
[ENA]
¡û
>W1911566948
PCPF01000003
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
58325
58249
-
Met
CAT
[ENA]
¡û
>W1911567202
PCPK01000009
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
58358
58282
-
Met
CAT
[ENA]
¡û
>W1911567287
PCPM01000009
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
58313
58237
-
Met
CAT
[ENA]
¡û
>W1911567382
PCPO01000004
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
77661
77737
+
Met
CAT
[ENA]
¡û
>W1911760363
QWTZ01000015
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
69800
69724
-
Met
CAT
[ENA]
¡û
>W1810474471
QAII01000031
Alphaproteobacteria
Caulobacter sp. HMWF025 [QAII]
63301
63225
-
Met
CAT
[ENA]
¡û
>W1810474472
QAII01000044
Alphaproteobacteria
Caulobacter sp. HMWF025 [QAII]
11215
11291
+
Met
CAT
[ENA]
¡û
>W1810474996
QAIR01000081
Alphaproteobacteria
Caulobacter sp. HMWF009 [QAIR]
3523
3599
+
Met
CAT
[ENA]
¡û
>W1810475027
QAIR01000303
Alphaproteobacteria
Caulobacter sp. HMWF009 [QAIR]
8136
8060
-
Met
CAT
[ENA]
¡û
>W1810503524
QBKE01000007
Alphaproteobacteria
Asticcacaulis sp. CF398 [QBKE]
87726
87802
+
Met
CAT
[ENA]
¡û
>W1810693154
QLLC01000008
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
40644
40568
-
Met
CAT
[ENA]
¡û
>C11100689
CP002395
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
616184
616108
-
Met
CAT
[Ensembl]
¡û
>W11123381
ADUH01000202
Alphaproteobacteria
Asticcacaulis biprosthecium C19 [ADUH]
31109
31185
+
Met
CAT
[ENA]
¡û
>W11123450
ADUI01000242
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
5296
5220
-
Met
CAT
[ENA]
¡û
>W1511596050
LBNT01000004
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
508386
508310
-
Met
CAT
[ENA]
¡û
>C161049361
CP013002
Alphaproteobacteria
Caulobacter henricii CB4 [CP013002]
3116828
3116752
-
Met
CAT
[Ensembl]
¡û
>C161049380
CP013002
Alphaproteobacteria
Caulobacter henricii CB4 [CP013002]
1109082
1109006
-
Met
CAT
[Ensembl]
¡û
>C161089820
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
2821959
2822035
+
Met
CAT
[Ensembl]
¡û
>W1710505473
FMTS01000002
Alphaproteobacteria
Asticcacaulis taihuensis [FMTS]
211164
211088
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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