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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146820 (58 seq.)
>W1710861885
LMDZ01000001
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
142308
142384
+
Pro
CGG
[ENA]
¡û
>W1710862188
LMEE01000002
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
399917
399993
+
Pro
CGG
[ENA]
¡û
>W1710866776
LMHT01000012
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
252826
252902
+
Pro
CGG
[ENA]
¡û
>W1710867694
LMIM01000005
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
399460
399536
+
Pro
CGG
[ENA]
¡û
>W1711386116
MEEX01000023
Alphaproteobacteria
Phenylobacterium sp. SCN 70-31 [MEEX]
74901
74977
+
Pro
CGG
[ENA]
¡û
>W1711501728
MKRY01000106
Alphaproteobacteria
Brevundimonas sp. 67-6 [MKRY]
6977
7053
+
Pro
CGG
[ENA]
¡û
>W1711718089
MTHE01000001
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
228422
228498
+
Pro
CGG
[ENA]
¡û
>W1712106174
NIVP01000004
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
137752
137828
+
Pro
CGG
[ENA]
¡û
>W131218269
ATXN01000003
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
310164
310088
-
Pro
CGG
[ENA]
¡û
>WENV180013889
FPIC01007296
[FPIC] soil metagenome; Soil
78
2
-
Pro
CGG
[ENA]
¢þ
>WENV180016289
FSUP01000413
[FSUP] metagenome; soil
433
509
+
Pro
CGG
[ENA]
¢þ
>WENV180016407
FSUX01000189
[FSUX] metagenome; soil
10
86
+
Pro
CGG
[ENA]
¢þ
>WENV180024179
FTIF01142960
[FTIF] metagenome; soil
236
160
-
Pro
CGG
[ENA]
¢þ
>WENV180026208
FTIR01367652
[FTIR] metagenome; soil
490
414
-
Pro
CGG
[ENA]
¢þ
>WENV180026266
FTIT01000350
[FTIT] metagenome; soil
3716
3640
-
Pro
CGG
[ENA]
¢þ
>WENV180026287
FTIT01000928
[FTIT] metagenome; soil
743
667
-
Pro
CGG
[ENA]
¢þ
>W141043006
AMFA01000076
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
2944
3020
+
Pro
CGG
[ENA]
¡û
>WENV180693784
OCZS011570856
[OCZS] soil metagenome; soil
104
28
-
Pro
CGG
[ENA]
¢þ
>WENV181227648
OFDN01025429
[OFDN] hot springs metagenome; Water
1079
1003
-
Pro
CGG
[ENA]
¢þ
>WENV181402204
OFTY01000236
[OFTY] sludge metagenome; sludge
26534
26610
+
Pro
CGG
[ENA]
¢þ
>WENV181732241
OGQD01018510
[OGQD] human gut metagenome; faeces
905
981
+
Pro
CGG
[ENA]
¢þ
>W141230489
BATC01000093
Alphaproteobacteria
Brevundimonas abyssalis TAR-001 [BATC]
110
34
-
Pro
CGG
[ENA]
¡û
>WENV183727518
PJTP01000009
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
235883
235807
-
Pro
CGG
[ENA]
¢þ
>WENV183728321
PJTQ01000015
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
347407
347483
+
Pro
CGG
[ENA]
¢þ
>WENV183730889
PJTS01001795
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
5605
5681
+
Pro
CGG
[ENA]
¢þ
>WENV183733481
PJTY01002655
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
352
276
-
Pro
CGG
[ENA]
¢þ
>WENV183733742
PJTY01019861
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
17
93
+
Pro
CGG
[ENA]
¢þ
>WENV183735561
PJUB01000047
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
116230
116154
-
Pro
CGG
[ENA]
¢þ
>WENV183738913
PJUE01000429
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
24115
24039
-
Pro
CGG
[ENA]
¢þ
>WENV183740157
PJUF01000502
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
5679
5603
-
Pro
CGG
[ENA]
¢þ
>WENV170646008
JQGF01006261
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
692
616
-
Pro
CGG
[ENA]
¢þ
>WENV170646185
JQGG01019459
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
529
605
+
Pro
CGG
[ENA]
¢þ
>WENV170707596
LNAP01026678
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3139
3215
+
Pro
CGG
[ENA]
¢þ
>WENV170707597
LNAP01026678
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4685
4761
+
Pro
CGG
[ENA]
¢þ
>WENV170708243
LNAP01062007
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
771
695
-
Pro
CGG
[ENA]
¢þ
>C181097380
CP024201
Alphaproteobacteria
Caulobacter mirabilis FWC 38 [CP024201]
1177133
1177057
-
Pro
CGG
-
¡û
>C181179051
CP029479
Alphaproteobacteria
Phenylobacterium parvum HYN0004 [CP029479]
555196
555120
-
Pro
CGG
-
¡û
>C191094014
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
2394195
2394119
-
Pro
CGG
-
¡û
>C191134433
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
2594084
2594160
+
Pro
CGG
-
¡û
>C191157380
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
1309733
1309809
+
Pro
CGG
-
¡û
>C191159631
CP038440
Alphaproteobacteria
Brevundimonas sp. MF30-B [CP038440]
1711092
1711016
-
Pro
CGG
-
¡û
>C191220452
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
1434031
1433955
-
Pro
CGG
-
¡û
>W141551924
JHOF01000018
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
583228
583304
+
Pro
CGG
[ENA]
¡û
>W1910182688
BJNC01000009
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
77899
77823
-
Pro
CGG
[ENA]
¡û
>W1910374332
FUIE01000049
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
70009
69933
-
Pro
CGG
[ENA]
¡û
>W1911738148
QUOQ01000003
Alphaproteobacteria
Brevundimonas lutea NS26 [QUOQ]
373353
373429
+
Pro
CGG
[ENA]
¡û
>W1911760330
QWTZ01000002
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
587991
588067
+
Pro
CGG
[ENA]
¡û
>W1810000957
BEWU01000007
Alphaproteobacteria
Brevundimonas denitrificans TAR-002 [BEWU]
5860
5936
+
Pro
CGG
[ENA]
¡û
>W1810594001
QFYP01000001
Alphaproteobacteria
Phenylobacterium hankyongense HKS-05 [QFYP]
580605
580681
+
Pro
CGG
[ENA]
¡û
>W1810594098
QFYR01000001
Alphaproteobacteria
Phenylobacterium deserti YIM 73061 [QFYR]
1669552
1669476
-
Pro
CGG
[ENA]
¡û
>W1510639831
CVJQ01000001
Alphaproteobacteria
Phenylobacterium immobile [ATCC 35973] [CVJQ]
2822721
2822797
+
Pro
CGG
[ENA]
¡û
>W11123433
ADUI01000118
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
56062
56138
+
Pro
CGG
[ENA]
¡û
>W1511596053
LBNT01000005
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
105094
105170
+
Pro
CGG
[ENA]
¡û
>C161089843
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
689467
689391
-
Pro
CGG
[Ensembl]
¡û
>W1610724231
LMDZ01000001
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
142308
142384
+
Pro
CGG
[ENA]
¡û
>W1610724534
LMEE01000002
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
399917
399993
+
Pro
CGG
[ENA]
¡û
>W1610729122
LMHT01000012
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
252826
252902
+
Pro
CGG
[ENA]
¡û
>W1610730040
LMIM01000005
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
399460
399536
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK