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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146914 (5 seq.)
>W2011967603
VBVX01000235
Actinomycetota
Streptomyces albidochromogenes DSM 41800 [VBVX]
7835
7910
+
Leu
CAA
[ENA]
¡û
>C241169870
CP054918
Actinomycetota
Streptomyces sp. NA04227 [CP054918]
1325892
1325967
+
Leu
CAA
-
¡û
>W1510647366
CVPB01000001
Actinomycetota
Streptomyces sp. Wb2n-11 [CVPB]
5318652
5318577
-
Leu
CAA
[ENA]
¡û
>W1710507489
FMVI01000001
Actinomycetota
Streptomyces sp. 136MFCol5.1 [FMVI]
1616400
1616325
-
Leu
CAA
[ENA]
¡û
>W1710576678
FPAE01000003
Actinomycetota
Streptomyces sp. ok210 [FPAE]
493486
493411
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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