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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146916 (127 seq.)
>W1710860841
LMDE01000015
Actinomycetota
Nocardioides sp. Root122 [LMDE]
117948
117874
-
Pro
CGG
[ENA]
¡û
>W1710861726
LMDV01000010
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
332917
332991
+
Pro
CGG
[ENA]
¡û
>W1710863691
LMFI01000002
Actinomycetota
Nocardioides sp. Root140 [LMFI]
93787
93710
-
Pro
CGG
[ENA]
¡û
>W1710864898
LMGG01000001
Actinomycetota
Nocardioides sp. Root151 [LMGG]
1360589
1360666
+
Pro
CGG
[ENA]
¡û
>W1710865650
LMGV01000008
Actinomycetota
Nocardioides sp. Root614 [LMGV]
154601
154525
-
Pro
CGG
[ENA]
¡û
>W1710866348
LMHJ01000004
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
204139
204063
-
Pro
CGG
[ENA]
¡û
>W1710867107
LMIA01000001
Actinomycetota
Nocardioides sp. Root190 [LMIA]
498693
498769
+
Pro
CGG
[ENA]
¡û
>W1710867747
LMIN01000011
Actinomycetota
Nocardioides sp. Root224 [LMIN]
334479
334553
+
Pro
CGG
[ENA]
¡û
>W1710867817
LMIP01000010
Actinomycetota
Nocardioides sp. Root79 [LMIP]
337090
337166
+
Pro
CGG
[ENA]
¡û
>W1710868025
LMIT01000011
Actinomycetota
Nocardioides sp. Root240 [LMIT]
336951
337027
+
Pro
CGG
[ENA]
¡û
>W1710874059
LMNH01000002
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
234912
234836
-
Pro
CGG
[ENA]
¡û
>W1710874867
LMNY01000001
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
231682
231606
-
Pro
CGG
[ENA]
¡û
>W1710880657
LMSM01000006
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
439521
439447
-
Pro
CGG
[ENA]
¡û
>W1710880710
LMSN01000016
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
367642
367566
-
Pro
CGG
[ENA]
¡û
>W1710880891
LMSQ01000018
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
1065164
1065241
+
Pro
CGG
[ENA]
¡û
>W1710880938
LMSR01000016
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
94691
94614
-
Pro
CGG
[ENA]
¡û
>W1710881054
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
1694107
1694183
+
Pro
CGG
[ENA]
¡û
>W1711126710
LUPF01000033
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
7875
7801
-
Pro
CGG
[ENA]
¡û
>W1711126786
LUPH01000271
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
495
421
-
Pro
CGG
[ENA]
¡û
>W1711126831
LUPI01000087
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
5411
5337
-
Pro
CGG
[ENA]
¡û
>W1711126907
LUPK01000051
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
5437
5363
-
Pro
CGG
[ENA]
¡û
>W1711126931
LUPL01000029
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
14662
14736
+
Pro
CGG
[ENA]
¡û
>W1711126988
LUPM01000294
Actinomycetota
Nocardioides sp. REDSEA-S36_B10 [LUPM]
5753
5827
+
Pro
CGG
[ENA]
¡û
>W1711127044
LUPO01000012
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
23881
23807
-
Pro
CGG
[ENA]
¡û
>W1711127102
LUPP01000066
Actinomycetota
Nocardioides sp. REDSEA-S40_B4 [LUPP]
5435
5361
-
Pro
CGG
[ENA]
¡û
>W1711127119
LUPQ01000025
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
35821
35895
+
Pro
CGG
[ENA]
¡û
>W1712084120
NHQT01000002
Actinomycetota
Nocardioides sp. XL1 [NHQT]
5781
5705
-
Pro
CGG
[ENA]
¡û
>W131227870
AUFN01000008
Actinomycetota
Nocardioides alkalitolerans DSM 16699 [AUFN]
212646
212720
+
Pro
CGG
[ENA]
¡û
>W131229381
AUGT01000011
Actinomycetota
Nocardioides halotolerans DSM 19273 [AUGT]
37239
37313
+
Pro
CGG
[ENA]
¡û
>C015220
CP000509
Actinomycetota
Nocardioides sp. JS614 [CP000509]
347193
347117
-
Pro
CGG
[Ensembl]
¡û
>WENV180000088
CZKB01000027
[CZKB] metagenome; liquid mineral medium
2947
3021
+
Pro
CGG
[ENA]
¢þ
>WENV180019347
FTBU01001614
[FTBU] metagenome; soil
1767
1689
-
Pro
CGG
[ENA]
¢þ
>WENV180342820
OBLJ01147740
[OBLJ] soil metagenome; Clay
253
327
+
Pro
CGG
[ENA]
¢þ
>WENV180344986
OBLL01446524
[OBLL] soil metagenome; soil
96
21
-
Pro
CGG
[ENA]
¢þ
>WENV180691238
OCZS010083069
[OCZS] soil metagenome; soil
394
320
-
Pro
CGG
[ENA]
¢þ
>WENV181223462
OFDC01019121
[OFDC] hot springs metagenome; Water
181
256
+
Pro
CGG
[ENA]
¢þ
>WENV181298585
OFHL01139981
[OFHL] soil metagenome; Clay
313
387
+
Pro
CGG
[ENA]
¢þ
>W141277555
JAER01000025
Actinomycetota
Nocardioides sp. J54 [JAER]
12615
12691
+
Pro
CGG
[ENA]
¡û
>WENV170229512
CEQG01126773
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
519
445
-
Pro
CGG
[ENA]
¢þ
>WENV170727522
LULE01000317
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
5435
5361
-
Pro
CGG
[ENA]
¢þ
>WENV170728160
LULE01011171
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
1767
1693
-
Pro
CGG
[ENA]
¢þ
>WENV170728637
LULF01000022
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
23881
23807
-
Pro
CGG
[ENA]
¢þ
>WENV170731043
LULH01019471
[LULH] marine metagenome; Red Sea water column Station 169 - depth 100m
151
77
-
Pro
CGG
[ENA]
¢þ
>WENV170731793
LULI01004139
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
5753
5827
+
Pro
CGG
[ENA]
¢þ
>WENV170732371
LULI01041036
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
476
550
+
Pro
CGG
[ENA]
¢þ
>WENV170733320
LULJ01012293
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
155
229
+
Pro
CGG
[ENA]
¢þ
>WENV170734430
LULK01005816
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
1954
2028
+
Pro
CGG
[ENA]
¢þ
>WENV170735055
LULK01048557
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
448
522
+
Pro
CGG
[ENA]
¢þ
>WENV170735140
LULL01000093
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
5437
5363
-
Pro
CGG
[ENA]
¢þ
>WENV170736839
LULM01039782
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
310
236
-
Pro
CGG
[ENA]
¢þ
>WENV170737420
LULO01000062
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
5411
5337
-
Pro
CGG
[ENA]
¢þ
>WENV170739419
LULQ01001064
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
495
421
-
Pro
CGG
[ENA]
¢þ
>WENV170740462
LULR01011319
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
731
805
+
Pro
CGG
[ENA]
¢þ
>WENV170741857
LULT01009349
[LULT] marine metagenome; Red Sea water column Station 108 - depth 100m
198
124
-
Pro
CGG
[ENA]
¢þ
>WENV170743481
LULW01000184
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
8978
9052
+
Pro
CGG
[ENA]
¢þ
>WENV170743967
LULW01011948
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
2372
2446
+
Pro
CGG
[ENA]
¢þ
>WENV170746403
LULZ01034776
[LULZ] marine metagenome; Red Sea water column Station 91 - depth 100m
232
306
+
Pro
CGG
[ENA]
¢þ
>WENV170758981
LUMS01000745
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
4982
5056
+
Pro
CGG
[ENA]
¢þ
>WENV170760785
LUMU01000175
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
35821
35895
+
Pro
CGG
[ENA]
¢þ
>WENV170761554
LUMV01001376
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
33
107
+
Pro
CGG
[ENA]
¢þ
>C181119567
CP025581
Actinomycetota
Nocardioides houyundeii 78 [CP025581]
3459814
3459888
+
Pro
CGG
-
¡û
>C191104215
CP033324
Actinomycetota
Nocardioides pantholopis 603 [CP033324]
255787
255712
-
Pro
CGG
-
¡û
>C191159446
CP038436
Actinomycetota
Nocardioides seonyuensis MMS17-SY207-3 [CP038436]
1354843
1354919
+
Pro
CGG
-
¡û
>C191159916
CP038462
Actinomycetota
Nocardioides daphniae JCM 16608 [CP038462]
3350569
3350643
+
Pro
CGG
-
¡û
>C191181618
CP040695
Actinomycetota
Nocardioides sp. S-1144 [CP040695]
355159
355082
-
Pro
CGG
-
¡û
>C191182476
CP040748
Actinomycetota
Nocardioides jishulii dk3136 [CP040748]
3327262
3327336
+
Pro
CGG
-
¡û
>C191186699
CP041091
Actinomycetota
Nocardioides sambongensis KUDC 5002 [CP041091]
3869907
3869829
-
Pro
CGG
-
¡û
>C191187011
CP041146
Actinomycetota
Nocardioides humi DCY24 [CP041146]
3925445
3925370
-
Pro
CGG
-
¡û
>W09103274
AAJB01000040
Actinomycetota
Nocardioides sp. JS614 [AAJB]
41819
41895
+
Pro
CGG
[ENA]
¡û
>W141564314
JIAR01000003
Actinomycetota
Nocardioides sp. URHA0020 [JIAR]
73031
72957
-
Pro
CGG
[ENA]
¡û
>W141564505
JIAV01000012
Actinomycetota
Nocardioides sp. URHA0032 [JIAV]
279011
278935
-
Pro
CGG
[ENA]
¡û
>W141815867
JQJL01000015
Actinomycetota
Nocardioides sp. UNC345MFTsu5.1 [JQJL]
454
378
-
Pro
CGG
[ENA]
¡û
>W1910181520
BJMC01000005
Actinomycetota
Pimelobacter simplex NBRC 12069 [BJMC]
256188
256263
+
Pro
CGG
[ENA]
¡û
>W1911672123
QGDD01000007
Actinomycetota
Nocardioides silvaticus CCTCC AB 2018079 [QGDD]
2182
2107
-
Pro
CGG
[ENA]
¡û
>W1911768149
QXGH01000016
Actinomycetota
Nocardioides immobilis CCTCC AB 2017083 [QXGH]
144253
144328
+
Pro
CGG
[ENA]
¡û
>W1911823574
QZVR01000016
Actinomycetota
Nocardioides ferulae SZ4R5S7 [QZVR]
87455
87533
+
Pro
CGG
[ENA]
¡û
>W1810157302
PJBV01000017
Actinomycetota
Nocardioides alpinus DSM 23325 [PJBV]
218726
218801
+
Pro
CGG
[ENA]
¡û
>W1810196854
PNFA01000015
Actinomycetota
Microbacterium halophytorum YJYP303 [PNFA]
59885
59961
+
Pro
CGG
[ENA]
¡û
>W1810201595
POAG01000024
Actinomycetota
Nocardioides sp. 616 [POAG]
98646
98720
+
Pro
CGG
[ENA]
¡û
>W1810427491
PYXZ01000001
Actinomycetota
Nocardioides currus IB-3 [PYXZ]
823294
823369
+
Pro
CGG
[ENA]
¡û
>W1810462654
PZYY01000001
Actinomycetota
Nocardioides terrigena KCTC 19217 [PZYY]
72361
72285
-
Pro
CGG
[ENA]
¡û
>W1810462725
PZYZ01000004
Actinomycetota
Nocardioides sediminis KCTC 19271 [PZYZ]
266788
266712
-
Pro
CGG
[ENA]
¡û
>W1810504005
QBKO01000013
Actinomycetota
Nocardioides sp. CF167 [QBKO]
27194
27269
+
Pro
CGG
[ENA]
¡û
>W1810539903
QDGZ01000005
Actinomycetota
Nocardioides gansuensis WSJ-1 [QDGZ]
242382
242306
-
Pro
CGG
[ENA]
¡û
>W1810626160
QHKX01000001
Actinomycetota
Nocardioides solisilvae Ka25 [QHKX]
423245
423321
+
Pro
CGG
[ENA]
¡û
>W1810756474
QPFD01000009
Actinomycetota
Nocardioides houyundeii 601 [QPFD]
203
129
-
Pro
CGG
[ENA]
¡û
>C151061361
CP009896
Actinomycetota
Pimelobacter simplex VKM Ac-2033D [CP009896]
570511
570435
-
Pro
CGG
[Ensembl]
¡û
>W1510060504
CCXJ01000103
Actinomycetota
Nocardioides massiliensis GD13 [CCXJ]
3002
2926
-
Pro
CGG
[ENA]
¡û
>C161082889
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
1605041
1604967
-
Pro
CGG
[Ensembl]
¡û
>W1610050544
BBFY01001917
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
354
277
-
Pro
CGG
[ENA]
¡û
>W1610068505
BCRJ01000121
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
5390
5313
-
Pro
CGG
[ENA]
¡û
>W1610723187
LMDE01000015
Actinomycetota
Nocardioides sp. Root122 [LMDE]
117948
117874
-
Pro
CGG
[ENA]
¡û
>W1610724072
LMDV01000010
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
332917
332991
+
Pro
CGG
[ENA]
¡û
>W1610726037
LMFI01000002
Actinomycetota
Nocardioides sp. Root140 [LMFI]
93787
93710
-
Pro
CGG
[ENA]
¡û
>W1610727244
LMGG01000001
Actinomycetota
Nocardioides sp. Root151 [LMGG]
1360589
1360666
+
Pro
CGG
[ENA]
¡û
>W1610727996
LMGV01000008
Actinomycetota
Nocardioides sp. Root614 [LMGV]
154601
154525
-
Pro
CGG
[ENA]
¡û
>W1610728694
LMHJ01000004
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
204139
204063
-
Pro
CGG
[ENA]
¡û
>W1610729453
LMIA01000001
Actinomycetota
Nocardioides sp. Root190 [LMIA]
498693
498769
+
Pro
CGG
[ENA]
¡û
>W1610730093
LMIN01000011
Actinomycetota
Nocardioides sp. Root224 [LMIN]
334479
334553
+
Pro
CGG
[ENA]
¡û
>W1610730163
LMIP01000010
Actinomycetota
Nocardioides sp. Root79 [LMIP]
337090
337166
+
Pro
CGG
[ENA]
¡û
>W1610730371
LMIT01000011
Actinomycetota
Nocardioides sp. Root240 [LMIT]
336951
337027
+
Pro
CGG
[ENA]
¡û
>W1610736405
LMNH01000002
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
234912
234836
-
Pro
CGG
[ENA]
¡û
>W1610737213
LMNY01000001
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
231682
231606
-
Pro
CGG
[ENA]
¡û
>W1610743003
LMSM01000006
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
439521
439447
-
Pro
CGG
[ENA]
¡û
>W1610743056
LMSN01000016
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
367642
367566
-
Pro
CGG
[ENA]
¡û
>W1610743237
LMSQ01000018
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
1065164
1065241
+
Pro
CGG
[ENA]
¡û
>W1610743284
LMSR01000016
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
94691
94614
-
Pro
CGG
[ENA]
¡û
>W1610743400
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
1694107
1694183
+
Pro
CGG
[ENA]
¡û
>W1610937824
LUPF01000033
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
7875
7801
-
Pro
CGG
[ENA]
¡û
>W1610937900
LUPH01000271
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
495
421
-
Pro
CGG
[ENA]
¡û
>W1610937945
LUPI01000087
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
5411
5337
-
Pro
CGG
[ENA]
¡û
>W1610938021
LUPK01000051
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
5437
5363
-
Pro
CGG
[ENA]
¡û
>W1610938045
LUPL01000029
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
14662
14736
+
Pro
CGG
[ENA]
¡û
>W1610938102
LUPM01000294
Actinomycetota
Nocardioides sp. REDSEA-S36_B10 [LUPM]
5753
5827
+
Pro
CGG
[ENA]
¡û
>W1610938158
LUPO01000012
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
23881
23807
-
Pro
CGG
[ENA]
¡û
>W1610938216
LUPP01000066
Actinomycetota
Nocardioides sp. REDSEA-S40_B4 [LUPP]
5435
5361
-
Pro
CGG
[ENA]
¡û
>W1610938233
LUPQ01000025
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
35821
35895
+
Pro
CGG
[ENA]
¡û
>W1710046943
BBFY01001917
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
354
277
-
Pro
CGG
[ENA]
¡û
>W1710065878
BCRJ01000121
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
5390
5313
-
Pro
CGG
[ENA]
¡û
>W1710083204
BDJE01000028
Actinomycetota
Nocardioides sp. PD653-B2 [BDJE]
90163
90237
+
Pro
CGG
[ENA]
¡û
>W1710083303
BDJG01000005
Actinomycetota
Nocardioides sp. PD653 [BDJG]
90163
90237
+
Pro
CGG
[ENA]
¡û
>W1710512532
FMZM01000004
Actinomycetota
Nocardioides lianchengensis [FMZM]
255567
255643
+
Pro
CGG
[ENA]
¡û
>W1710523574
FNIC01000003
Actinomycetota
Nocardioides szechwanensis [FNIC]
308738
308814
+
Pro
CGG
[ENA]
¡û
>W1710534298
FNRT01000002
Actinomycetota
Nocardioides exalbidus [FNRT]
1771957
1771883
-
Pro
CGG
[ENA]
¡û
>W1710556299
FOKC01000005
Actinomycetota
Nocardioides alpinus [FOKC]
118098
118022
-
Pro
CGG
[ENA]
¡û
>W1710564118
FOQG01000003
Actinomycetota
Nocardioides psychrotolerans [FOQG]
119345
119419
+
Pro
CGG
[ENA]
¡û
>W1710569422
FOUK01000005
Actinomycetota
Pimelobacter simplex [FOUK]
160982
160906
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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