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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146923 (67 seq.)
>W1710863654
LMFH01000006
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
220546
220622
+
Pro
TGG
[ENA]
¡û
>W1710864836
LMGE01000017
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
54122
54198
+
Pro
TGG
[ENA]
¡û
>W1710865476
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
379405
379481
+
Pro
TGG
[ENA]
¡û
>W1710866121
LMHF01000014
Gammaproteobacteria
Lysobacter sp. Root667 [LMHF]
284937
285013
+
Pro
TGG
[ENA]
¡û
>W1710866456
LMHM01000011
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
603646
603570
-
Pro
TGG
[ENA]
¡û
>W1710867614
LMIK01000008
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
199881
199805
-
Pro
TGG
[ENA]
¡û
>W1710868595
LMJF01000001
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
380164
380240
+
Pro
TGG
[ENA]
¡û
>W1710868969
LMJN01000003
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
199876
199800
-
Pro
TGG
[ENA]
¡û
>W1710869022
LMJO01000017
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
299904
299828
-
Pro
TGG
[ENA]
¡û
>W1711384941
MEDO01000002
Gammaproteobacteria
Arenimonas sp. SCN 70-307 [MEDO]
49836
49912
+
Pro
TGG
[ENA]
¡û
>W1711424111
MIDT01000115
Gammaproteobacteria
Xanthomonadales bacterium GWF1_69_6 [MIDT]
10278
10202
-
Pro
TGG
[ENA]
¡û
>W131227530
AUFF01000004
Gammaproteobacteria
Arenimonas composti DSM 18010 [AUFF]
29359
29283
-
Pro
TGG
[ENA]
¡û
>W131244862
CAQP01000028
Gammaproteobacteria
Lysobacter antibioticus HS124 [CAQP]
9054
9130
+
Pro
TGG
[ENA]
¡û
>W1711711509
MTAY01000048
Gammaproteobacteria
Lysobacter enzymogenes [MTAY]
71629
71553
-
Pro
TGG
[ENA]
¡û
>WENV180017627
FSXK01001892
[FSXK] metagenome; soil
11881
11805
-
Pro
TGG
[ENA]
¢þ
>WENV180035724
FTLB01001621
[FTLB] metagenome; soil
219
143
-
Pro
TGG
[ENA]
¢þ
>WENV180041106
LLBZ010044528
[LLBZ] soil metagenome; soil from tomato rhizosphere
388
464
+
Pro
TGG
[ENA]
¢þ
>W141094214
AVCH01000149
Gammaproteobacteria
Arenimonas malthae CC-JY-1 [AVCH]
10481
10405
-
Pro
TGG
[ENA]
¡û
>W141094313
AVCJ01000051
Gammaproteobacteria
Arenimonas donghaensis DSM 18148 = HO3-R19 [AVCJ]
98805
98881
+
Pro
TGG
[ENA]
¡û
>W141094360
AVCK01000063
Gammaproteobacteria
Arenimonas metalli CF5-1 [AVCK]
11881
11805
-
Pro
TGG
[ENA]
¡û
>W141148239
AWXU01000020
Gammaproteobacteria
Arenimonas composti TR7-09 = DSM 18010 [AWXU]
111677
111753
+
Pro
TGG
[ENA]
¡û
>WENV182401765
OIER01010860
[OIER] human gut metagenome; human gut
739
815
+
Pro
TGG
[ENA]
¢þ
>WENV182589681
OJIF01004009
[OJIF] seawater metagenome; Sea water
327
403
+
Pro
TGG
[ENA]
¢þ
>W141282834
JAJA01000018
Gammaproteobacteria
Lysobacter capsici AZ78 [JAJA]
32276
32352
+
Pro
TGG
[ENA]
¡û
>WENV182941701
OKVG01005491
[OKVG] human gut metagenome; human gut
2019
2095
+
Pro
TGG
[ENA]
¢þ
>WENV182944224
OKVI01008082
[OKVI] human gut metagenome; human gut
997
1073
+
Pro
TGG
[ENA]
¢þ
>WENV183697506
OUNK010000066
[OUNK] metagenome; soil
21929
22005
+
Pro
TGG
[ENA]
¢þ
>WENV170577899
FSSH01002527
[FSSH] freshwater metagenome; drinking water
3911
3835
-
Pro
TGG
[ENA]
¢þ
>WENV170667998
LADL02000058
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
4077
4153
+
Pro
TGG
[ENA]
¢þ
>WENV170714182
LNFM01059364
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
81
5
-
Pro
TGG
[ENA]
¢þ
>C181000998
AP014940
Gammaproteobacteria
Lysobacter enzymogenes M497-1 [AP014940]
1985471
1985547
+
Pro
TGG
-
¡û
>C181081792
CP023465
Gammaproteobacteria
Lysobacter capsici KNU-14 [CP023465]
2000035
2000111
+
Pro
TGG
-
¡û
>C191138621
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
1406800
1406724
-
Pro
TGG
-
¡û
>C191181062
CP040656
Gammaproteobacteria
Lysobacter enzymogenes YC36 [CP040656]
4015745
4015669
-
Pro
TGG
-
¡û
>W141564948
JIBD01000016
Gammaproteobacteria
Dyella japonica UNC79MFTsu3.2 [JIBD]
586705
586629
-
Pro
TGG
[ENA]
¡û
>W141713910
JMTZ01000040
Gammaproteobacteria
Lysobacter antibioticus [JMTZ]
29861
29937
+
Pro
TGG
[ENA]
¡û
>W1910896579
NFZS01000001
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
1960764
1960840
+
Pro
TGG
[ENA]
¡û
>W1810354831
PVLF01000001
Gammaproteobacteria
Arenimonas caeni z29 [PVLF]
28584
28508
-
Pro
TGG
[ENA]
¡û
>W1810629401
QIRF01000001
Gammaproteobacteria
Dyella sp. C9 [QIRF]
423573
423649
+
Pro
TGG
[ENA]
¡û
>W1810762587
QQAH01000001
Gammaproteobacteria
Dyella tabacisoli L4-6 [QQAH]
410767
410691
-
Pro
TGG
[ENA]
¡û
>W1810783261
QQSY01000003
Gammaproteobacteria
Dyella solisilvae DHG54 [QQSY]
558547
558623
+
Pro
TGG
[ENA]
¡û
>W1810785103
QRBE01000008
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
80451
80375
-
Pro
TGG
[ENA]
¡û
>W1810785131
QRBF01000001
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
904777
904701
-
Pro
TGG
[ENA]
¡û
>W1810858437
QTJR01000008
Gammaproteobacteria
Lysobacter soli KCTC 22011 [QTJR]
92403
92479
+
Pro
TGG
[ENA]
¡û
>W1810860351
QTSU01000001
Gammaproteobacteria
Lysobacter silvisoli zong2l5 [QTSU]
333763
333839
+
Pro
TGG
[ENA]
¡û
>C151023748
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
2417356
2417280
-
Pro
TGG
[Ensembl]
¡û
>C151039105
CP008884
Gammaproteobacteria
Dyella japonica A8 [CP008884]
3467972
3467896
-
Pro
TGG
[Ensembl]
¡û
>W1511594998
LBMI01000004
Gammaproteobacteria
Lysobacter capsici X2-3 [LBMI]
226172
226248
+
Pro
TGG
[ENA]
¡û
>C161031542
CP011129
Gammaproteobacteria
Lysobacter antibioticus 76 [CP011129]
2100496
2100572
+
Pro
TGG
[Ensembl]
¡û
>C161031590
CP011130
Gammaproteobacteria
Lysobacter capsici 55 [CP011130]
2006576
2006652
+
Pro
TGG
[Ensembl]
¡û
>C161031657
CP011131
Gammaproteobacteria
Lysobacter gummosus 3.2.11 [CP011131]
3740031
3739955
-
Pro
TGG
[Ensembl]
¡û
>C161052044
CP013140
Gammaproteobacteria
Lysobacter enzymogenes C3 [CP013140]
3823535
3823459
-
Pro
TGG
[Ensembl]
¡û
>C161052102
CP013141
Gammaproteobacteria
Lysobacter antibioticus ATCC 29479 [CP013141]
3452885
3452809
-
Pro
TGG
-
¡û
>W1610726000
LMFH01000006
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
220546
220622
+
Pro
TGG
[ENA]
¡û
>W1610727182
LMGE01000017
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
54122
54198
+
Pro
TGG
[ENA]
¡û
>W1610727822
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
379405
379481
+
Pro
TGG
[ENA]
¡û
>W1610728467
LMHF01000014
Gammaproteobacteria
Lysobacter sp. Root667 [LMHF]
284937
285013
+
Pro
TGG
[ENA]
¡û
>W1610728802
LMHM01000011
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
603646
603570
-
Pro
TGG
[ENA]
¡û
>W1610729960
LMIK01000008
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
199881
199805
-
Pro
TGG
[ENA]
¡û
>W1610730941
LMJF01000001
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
380164
380240
+
Pro
TGG
[ENA]
¡û
>W1610731315
LMJN01000003
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
199876
199800
-
Pro
TGG
[ENA]
¡û
>W1610731368
LMJO01000017
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
299904
299828
-
Pro
TGG
[ENA]
¡û
>W1710529748
FNOG01000003
Gammaproteobacteria
Lysobacter enzymogenes [FNOG]
522650
522726
+
Pro
TGG
[ENA]
¡û
>W1710531702
FNPT01000001
Gammaproteobacteria
Lysobacter sp. yr284 [FNPT]
920643
920567
-
Pro
TGG
[ENA]
¡û
>W1710560306
FONH01000001
Gammaproteobacteria
Dyella marensis [FONH]
586561
586485
-
Pro
TGG
[ENA]
¡û
>W1710567396
FOSS01000002
Gammaproteobacteria
Lysobacter sp. cf310 [FOSS]
629929
629853
-
Pro
TGG
[ENA]
¡û
>W1710575663
FOZI01000003
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
108349
108425
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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