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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146926 (92 seq.)
>W1710785189
LJHQ01000042
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
31351
31275
-
His
GTG
[ENA]
¡û
>W1710858037
LMAR01000057
Alphaproteobacteria
Bosea thiooxidans [LMAR]
14354
14430
+
His
GTG
[ENA]
¡û
>W1710869461
LMJT01000001
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
395486
395410
-
His
GTG
[ENA]
¡û
>W1710869508
LMJU01000001
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
849294
849218
-
His
GTG
[ENA]
¡û
>W1710869617
LMJW01000001
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
281946
281870
-
His
GTG
[ENA]
¡û
>W1710879508
LMRT01000001
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
110829
110753
-
His
GTG
[ENA]
¡û
>W1710893369
LNER01000439
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
5431
5507
+
His
GTG
[ENA]
¡û
>W1710893502
LNEV01000007
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
232259
232183
-
His
GTG
[ENA]
¡û
>W1711072961
LSIB01000159
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
62364
62288
-
His
GTG
[ENA]
¡û
>W1711073130
LSIG01000102
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
19891
19815
-
His
GTG
[ENA]
¡û
>W1711073320
LSIK01000375
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
20730
20806
+
His
GTG
[ENA]
¡û
>W1711073814
LSIY01000102
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
20240
20316
+
His
GTG
[ENA]
¡û
>W1711074364
LSJL01000187
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
7985
7909
-
His
GTG
[ENA]
¡û
>W1711074521
LSJP01000396
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
20183
20259
+
His
GTG
[ENA]
¡û
>W1711074622
LSJR01000481
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
11544
11468
-
His
GTG
[ENA]
¡û
>W1711074744
LSJU01001276
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
990
1066
+
His
GTG
[ENA]
¡û
>W1711074759
LSJV01000070
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
25488
25412
-
His
GTG
[ENA]
¡û
>W1711074874
LSJX01000304
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
25590
25514
-
His
GTG
[ENA]
¡û
>W1711075568
LSKN01000115
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
25595
25519
-
His
GTG
[ENA]
¡û
>W1711385469
MEEG01000072
Alphaproteobacteria
Methylobacterium sp. SCN 67-24 [MEEG]
34794
34870
+
His
GTG
[ENA]
¡û
>W1711502379
MKSQ01000008
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
544474
544398
-
His
GTG
[ENA]
¡û
>C171049959
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
1723815
1723891
+
His
GTG
-
¡û
>C171057735
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
2431910
2431986
+
His
GTG
-
¡û
>w022273
AAWJ01000001
Alphaproteobacteria
Parvibaculum lavamentivorans DS-1 [AAWJ]
693142
693064
-
His
GTG
[ENA]
¡û
>WENV181227508
OFDN01013584
[OFDN] hot springs metagenome; Water
1738
1814
+
His
GTG
[ENA]
¢þ
>WENV181313952
OFJI01000468
[OFJI] marine metagenome; sea ice
965
1041
+
His
GTG
[ENA]
¢þ
>WENV181321475
OFKM01002782
[OFKM] marine metagenome; sea ice
917
993
+
His
GTG
[ENA]
¢þ
>WENV181323927
OFKZ01035759
[OFKZ] marine metagenome; sea ice
520
444
-
His
GTG
[ENA]
¢þ
>WENV181324350
OFLE01000190
[OFLE] marine metagenome; sea ice
1178
1254
+
His
GTG
[ENA]
¢þ
>WENV181415187
OGCL01005486
[OGCL] hot springs metagenome; Hot spring water
5399
5323
-
His
GTG
[ENA]
¢þ
>C08007325
CP000774
Alphaproteobacteria
Parvibaculum lavamentivorans DS-1 [CP000774]
609872
609948
+
His
GTG
[Ensembl]
¡û
>WENV183614776
OOEA01000622
[OOEA] marine metagenome; sea ice
1470
1546
+
His
GTG
[ENA]
¢þ
>WENV183630633
OOGU01000032
[OOGU] marine metagenome; sea ice
38070
37994
-
His
GTG
[ENA]
¢þ
>WENV170010250
APMI01011515
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
687
611
-
His
GTG
[ENA]
¢þ
>WENV170012099
APMI01120135
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
791
715
-
His
GTG
[ENA]
¢þ
>WENV170379658
CETV01175248
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
490
566
+
His
GTG
[ENA]
¢þ
>WENV170469703
CEVF01136090
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5395
5319
-
His
GTG
[ENA]
¢þ
>WENV170680714
LFEF01013432
[LFEF] freshwater metagenome; waterbloom
563
639
+
His
GTG
[ENA]
¢þ
>WENV170709185
LNFM01000170
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
63105
63181
+
His
GTG
[ENA]
¢þ
>WENV170712593
LNFM01015307
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
42551
42475
-
His
GTG
[ENA]
¢þ
>WENV170713426
LNFM01030903
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1128
1204
+
His
GTG
[ENA]
¢þ
>WENV170733622
LULJ01037566
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
450
526
+
His
GTG
[ENA]
¢þ
>WENV170963239
MRWG01000058
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
114068
114144
+
His
GTG
[ENA]
¢þ
>WENV171003191
NNBT01002254
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
32567
32491
-
His
GTG
[ENA]
¢þ
>WENV171003722
NNBV01000517
[NNBV] plant metagenome; symbiotic tissue sample KVS11
6041
6117
+
His
GTG
[ENA]
¢þ
>C181063210
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
4196488
4196412
-
His
GTG
-
¡û
>C191014032
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
2973688
2973612
-
His
GTG
-
¡û
>W141805285
JPKG01000006
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
1447
1371
-
His
GTG
[ENA]
¡û
>W141815798
JQJJ01000009
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
371933
372009
+
His
GTG
[ENA]
¡û
>W1910501736
FYAS01000045
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
43644
43568
-
His
GTG
[ENA]
¡û
>W1910635392
LNCQ01000007
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
13066
13142
+
His
GTG
[ENA]
¡û
>W1910840148
MZXT01000017
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
263150
263226
+
His
GTG
[ENA]
¡û
>W1910840154
MZXU01000003
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
263150
263226
+
His
GTG
[ENA]
¡û
>W1910847666
NBDP01000030
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
734411
734335
-
His
GTG
[ENA]
¡û
>W1810252023
PQFZ01000016
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
111416
111340
-
His
GTG
[ENA]
¡û
>W1810463389
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
446929
446853
-
His
GTG
[ENA]
¡û
>W1810676883
QKMI01000001
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
265149
265073
-
His
GTG
[ENA]
¡û
>W1810783320
QQTO01000023
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
40718
40642
-
His
GTG
[ENA]
¡û
>W1810783351
QQTP01000008
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
40856
40780
-
His
GTG
[ENA]
¡û
>W1511353031
JROW01000430
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
2294
2218
-
His
GTG
[ENA]
¡û
>C161070662
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
146267
146343
+
His
GTG
[Ensembl]
¡û
>W1610550610
JXTJ01000003
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
370397
370473
+
His
GTG
[ENA]
¡û
>W1610617155
LGSZ01000019
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
123365
123289
-
His
GTG
[ENA]
¡û
>W1610648995
LJHQ01000042
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
31351
31275
-
His
GTG
[ENA]
¡û
>W1610720383
LMAR01000057
Alphaproteobacteria
Bosea thiooxidans [LMAR]
14354
14430
+
His
GTG
[ENA]
¡û
>W1610731807
LMJT01000001
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
395486
395410
-
His
GTG
[ENA]
¡û
>W1610731854
LMJU01000001
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
849294
849218
-
His
GTG
[ENA]
¡û
>W1610731963
LMJW01000001
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
281946
281870
-
His
GTG
[ENA]
¡û
>W1610741854
LMRT01000001
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
110829
110753
-
His
GTG
[ENA]
¡û
>W1610753635
LNER01000439
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
5431
5507
+
His
GTG
[ENA]
¡û
>W1610753768
LNEV01000007
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
232259
232183
-
His
GTG
[ENA]
¡û
>W1610912221
LSIB01000159
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
62364
62288
-
His
GTG
[ENA]
¡û
>W1610912435
LSIG01000102
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
19891
19815
-
His
GTG
[ENA]
¡û
>W1610912625
LSIK01000375
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
20730
20806
+
His
GTG
[ENA]
¡û
>W1610913119
LSIY01000102
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
20240
20316
+
His
GTG
[ENA]
¡û
>W1610913669
LSJL01000187
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
7985
7909
-
His
GTG
[ENA]
¡û
>W1610913826
LSJP01000396
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
20183
20259
+
His
GTG
[ENA]
¡û
>W1610913927
LSJR01000481
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
11544
11468
-
His
GTG
[ENA]
¡û
>W1610914049
LSJU01001276
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
990
1066
+
His
GTG
[ENA]
¡û
>W1610914064
LSJV01000070
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
25488
25412
-
His
GTG
[ENA]
¡û
>W1610914179
LSJX01000304
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
25590
25514
-
His
GTG
[ENA]
¡û
>W1610914873
LSKN01000115
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
25595
25519
-
His
GTG
[ENA]
¡û
>W1710064211
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
879311
879235
-
His
GTG
[ENA]
¡û
>W1710515680
FNBZ01000001
Alphaproteobacteria
Bosea robiniae [FNBZ]
841685
841609
-
His
GTG
[ENA]
¡û
>W1710538930
FNUY01000001
Alphaproteobacteria
Bosea lathyri [FNUY]
705596
705672
+
His
GTG
[ENA]
¡û
>W1710544018
FOAN01000002
Alphaproteobacteria
Bosea lupini [FOAN]
570103
570027
-
His
GTG
[ENA]
¡û
>W1710556981
FOKP01000003
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
78262
78186
-
His
GTG
[ENA]
¡û
>W1710564913
FOQV01000003
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
163845
163769
-
His
GTG
[ENA]
¡û
>W1710596425
FTMO01000001
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
767244
767168
-
His
GTG
[ENA]
¡û
>W1710603283
FUYX01000004
Alphaproteobacteria
Bosea thiooxidans [FUYX]
3038
2962
-
His
GTG
[ENA]
¡û
>W1710660445
JXTJ01000003
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
370397
370473
+
His
GTG
[ENA]
¡û
>W1710742769
LGSZ01000019
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
123365
123289
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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