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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146971 (111 seq.)
>W1710862666
LMEO01000014
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
324
401
+
Pro
TGG
[ENA]
¡û
>W1710862675
LMEO01000023
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
774
849
+
Pro
TGG
[ENA]
¡û
>W1710862740
LMEO01000053
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
194765
194689
-
Pro
TGG
[ENA]
¡û
>W1710879854
LMRY01000018
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
626
703
+
Pro
TGG
[ENA]
¡û
>W1710879908
LMRY01000059
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
371022
370946
-
Pro
TGG
[ENA]
¡û
>W1710880132
LMSD01000017
Bacillota
Paenibacillus sp. Soil750 [LMSD]
60913
60836
-
Pro
TGG
[ENA]
¡û
>W1710880163
LMSD01000024
Bacillota
Paenibacillus sp. Soil750 [LMSD]
38171
38094
-
Pro
TGG
[ENA]
¡û
>W1710880182
LMSD01000030
Bacillota
Paenibacillus sp. Soil750 [LMSD]
4303
4379
+
Pro
TGG
[ENA]
¡û
>W1710880190
LMSD01000035
Bacillota
Paenibacillus sp. Soil750 [LMSD]
5271
5196
-
Pro
TGG
[ENA]
¡û
>W1710880491
LMSJ01000020
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
944
1021
+
Pro
TGG
[ENA]
¡û
>W1710880500
LMSJ01000035
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
56205
56130
-
Pro
TGG
[ENA]
¡û
>W1710880522
LMSJ01000053
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
792
867
+
Pro
TGG
[ENA]
¡û
>W1710880539
LMSJ01000060
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
240098
240022
-
Pro
TGG
[ENA]
¡û
>W1710880777
LMSP01000001
Bacillota
Paenibacillus sp. Soil787 [LMSP]
1121465
1121390
-
Pro
TGG
[ENA]
¡û
>W1710880800
LMSP01000024
Bacillota
Paenibacillus sp. Soil787 [LMSP]
547
623
+
Pro
TGG
[ENA]
¡û
>W1710880812
LMSP01000028
Bacillota
Paenibacillus sp. Soil787 [LMSP]
5742
5818
+
Pro
TGG
[ENA]
¡û
>W1710880853
LMSP01000037
Bacillota
Paenibacillus sp. Soil787 [LMSP]
8749
8674
-
Pro
TGG
[ENA]
¡û
>W1711220513
LXQN01000007
Bacillota
Paenibacillus sp. AD87 [LXQN]
4038327
4038254
-
Pro
TGG
[ENA]
¡û
>W1711252532
LYPB01000055
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
7983
7907
-
Pro
TGG
[ENA]
¡û
>W1711252551
LYPB01000066
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
696
773
+
Pro
TGG
[ENA]
¡û
>W1711252582
LYPB01000093
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
65970
65893
-
Pro
TGG
[ENA]
¡û
>W1711252590
LYPB01000097
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
3785
3861
+
Pro
TGG
[ENA]
¡û
>W1711252595
LYPC01000006
Bacillota
Paenibacillus pectinilyticus [LYPC]
4227
4151
-
Pro
TGG
[ENA]
¡û
>W1711252647
LYPC01000016
Bacillota
Paenibacillus pectinilyticus [LYPC]
208586
208510
-
Pro
TGG
[ENA]
¡û
>W1711252670
LYPC01000019
Bacillota
Paenibacillus pectinilyticus [LYPC]
106018
105941
-
Pro
TGG
[ENA]
¡û
>W1711252688
LYPC01000032
Bacillota
Paenibacillus pectinilyticus [LYPC]
306
383
+
Pro
TGG
[ENA]
¡û
>W131229620
AUGY01000083
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
35671
35594
-
Pro
TGG
[ENA]
¡û
>W131229640
AUGY01000105
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
24067
23992
-
Pro
TGG
[ENA]
¡û
>W131229669
AUGY01000152
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
121
196
+
Pro
TGG
[ENA]
¡û
>W1711338655
MBTG01000033
Bacillota
Paenibacillus ferrarius [MBTG]
75281
75206
-
Pro
TGG
[ENA]
¡û
>W1711338662
MBTG01000038
Bacillota
Paenibacillus ferrarius [MBTG]
3814
3890
+
Pro
TGG
[ENA]
¡û
>W1711338681
MBTG01000052
Bacillota
Paenibacillus ferrarius [MBTG]
27445
27369
-
Pro
TGG
[ENA]
¡û
>W1711338687
MBTG01000057
Bacillota
Paenibacillus ferrarius [MBTG]
172
248
+
Pro
TGG
[ENA]
¡û
>W131175968
ARJR01000022
Bacillota
Saccharibacillus kuerlensis DSM 22868 [ARJR]
34635
34562
-
Pro
TGG
[ENA]
¡û
>W131176005
ARJR01000058
Bacillota
Saccharibacillus kuerlensis DSM 22868 [ARJR]
540168
540092
-
Pro
TGG
[ENA]
¡û
>W131176714
ARKG01000055
Bacillota
Cohnella laeviribosi DSM 21336 [ARKG]
20440
20364
-
Pro
TGG
[ENA]
¡û
>W131229631
AUGY01000091
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
4199
4275
+
Pro
TGG
[ENA]
¡û
>W141251561
CBQR020000058
Bacillota
Gorillibacterium massiliense G5 [CBQR]
2108
2184
+
Pro
TGG
[ENA]
¡û
>WENV170705861
LNAP01000498
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
469
544
+
Pro
TGG
[ENA]
¢þ
>WENV170706097
LNAP01001080
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
27995
28068
+
Pro
TGG
[ENA]
¢þ
>W141452164
JFBU01000002
Bacillota
Saccharibacillus sacchari DSM 19268 [JFBU]
293399
293323
-
Pro
TGG
[ENA]
¡û
>C191188765
CP041217
Bacillota
Saccharibacillus brassicae ATSA2 [CP041217]
4223579
4223655
+
Pro
TGG
-
¡û
>W141564725
JIAZ01000033
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
58037
57960
-
Pro
TGG
[ENA]
¡û
>W141564736
JIAZ01000036
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
42346
42270
-
Pro
TGG
[ENA]
¡û
>W141564763
JIAZ01000041
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
340
417
+
Pro
TGG
[ENA]
¡û
>W1910154511
BILU01000100
Bacillota
Paenibacillus alginolyticus DSM 5050 = NBRC 15375 [BILU]
26923
26847
-
Pro
TGG
[ENA]
¡û
>W1910154532
BILU01000250
Bacillota
Paenibacillus alginolyticus DSM 5050 = NBRC 15375 [BILU]
23
98
+
Pro
TGG
[ENA]
¡û
>W1910154612
BILW01000073
Bacillota
Paenibacillus chondroitinus NBRC 15376 [BILW]
14923
14847
-
Pro
TGG
[ENA]
¡û
>W1910154618
BILW01000089
Bacillota
Paenibacillus chondroitinus NBRC 15376 [BILW]
6036
5962
-
Pro
TGG
[ENA]
¡û
>SRA1005908
SRR014589.37626
Metagenomic analysis of viruses in reclaimed water (SRP000673)
159
82
-
Pro
TGG
[SRA]
>SRA1005915
SRR014589.42015
Metagenomic analysis of viruses in reclaimed water (SRP000673)
202
125
-
Pro
TGG
[SRA]
>SRA1005954
SRR014589.71505
Metagenomic analysis of viruses in reclaimed water (SRP000673)
167
92
-
Pro
TGG
[SRA]
>SRA1005974
SRR014589.86346
Metagenomic analysis of viruses in reclaimed water (SRP000673)
85
10
-
Pro
TGG
[SRA]
>SRA1005975
SRR014589.86371
Metagenomic analysis of viruses in reclaimed water (SRP000673)
84
159
+
Pro
TGG
[SRA]
>SRA1005978
SRR014589.87262
Metagenomic analysis of viruses in reclaimed water (SRP000673)
147
70
-
Pro
TGG
[SRA]
>SRA1005988
SRR014589.91267
Metagenomic analysis of viruses in reclaimed water (SRP000673)
100
25
-
Pro
TGG
[SRA]
>SRA1006004
SRR014589.98471
Metagenomic analysis of viruses in reclaimed water (SRP000673)
181
258
+
Pro
TGG
[SRA]
>SRA1006027
SRR014589.124704
Metagenomic analysis of viruses in reclaimed water (SRP000673)
85
8
-
Pro
TGG
[SRA]
>SRA1006029
SRR014589.124873
Metagenomic analysis of viruses in reclaimed water (SRP000673)
105
30
-
Pro
TGG
[SRA]
>SRA1006057
SRR014589.153243
Metagenomic analysis of viruses in reclaimed water (SRP000673)
87
162
+
Pro
TGG
[SRA]
>SRA1006061
SRR014589.157103
Metagenomic analysis of viruses in reclaimed water (SRP000673)
73
-1
-
Pro
TGG
[SRA]
>SRA1006063
SRR014589.157591
Metagenomic analysis of viruses in reclaimed water (SRP000673)
153
230
+
Pro
TGG
[SRA]
>SRA1006081
SRR014589.174196
Metagenomic analysis of viruses in reclaimed water (SRP000673)
219
144
-
Pro
TGG
[SRA]
>SRA1006106
SRR014589.195808
Metagenomic analysis of viruses in reclaimed water (SRP000673)
272
195
-
Pro
TGG
[SRA]
>SRA1006114
SRR014589.204962
Metagenomic analysis of viruses in reclaimed water (SRP000673)
143
218
+
Pro
TGG
[SRA]
>SRA1006120
SRR014589.219980
Metagenomic analysis of viruses in reclaimed water (SRP000673)
66
141
+
Pro
TGG
[SRA]
>W1511433073
JUGY01000026
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
107667
107591
-
Pro
TGG
[ENA]
¡û
>W1511433077
JUGY01000034
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
80100
80024
-
Pro
TGG
[ENA]
¡û
>W1511433092
JUGY01000073
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
3
78
+
Pro
TGG
[ENA]
¡û
>W1511433104
JUGY01000078
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
12789
12865
+
Pro
TGG
[ENA]
¡û
>W1511577161
LAQO01000002
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
6370
6297
-
Pro
TGG
[ENA]
¡û
>W1511577204
LAQO01000030
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
99279
99203
-
Pro
TGG
[ENA]
¡û
>C121009309
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
585698
585774
+
Pro
TGG
[Ensembl]
¡û
>C121009327
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
702272
702348
+
Pro
TGG
[Ensembl]
¡û
>C121009391
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
8257985
8257909
-
Pro
TGG
[Ensembl]
¡û
>C121009402
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
7668326
7668250
-
Pro
TGG
[Ensembl]
¡û
>W1610095312
CYUM01000009
Bacillota
Gorillibacterium timonense SN4 [CYUM]
1108
1184
+
Pro
TGG
[ENA]
¡û
>W1610725012
LMEO01000014
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
324
401
+
Pro
TGG
[ENA]
¡û
>W1610725021
LMEO01000023
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
774
849
+
Pro
TGG
[ENA]
¡û
>W1610725086
LMEO01000053
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
194765
194689
-
Pro
TGG
[ENA]
¡û
>W1610742200
LMRY01000018
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
626
703
+
Pro
TGG
[ENA]
¡û
>W1610742254
LMRY01000059
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
371022
370946
-
Pro
TGG
[ENA]
¡û
>W1610742478
LMSD01000017
Bacillota
Paenibacillus sp. Soil750 [LMSD]
60913
60836
-
Pro
TGG
[ENA]
¡û
>W1610742509
LMSD01000024
Bacillota
Paenibacillus sp. Soil750 [LMSD]
38171
38094
-
Pro
TGG
[ENA]
¡û
>W1610742528
LMSD01000030
Bacillota
Paenibacillus sp. Soil750 [LMSD]
4303
4379
+
Pro
TGG
[ENA]
¡û
>W1610742536
LMSD01000035
Bacillota
Paenibacillus sp. Soil750 [LMSD]
5271
5196
-
Pro
TGG
[ENA]
¡û
>W1610742837
LMSJ01000020
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
944
1021
+
Pro
TGG
[ENA]
¡û
>W1610742846
LMSJ01000035
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
56205
56130
-
Pro
TGG
[ENA]
¡û
>W1610742868
LMSJ01000053
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
792
867
+
Pro
TGG
[ENA]
¡û
>W1610742885
LMSJ01000060
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
240098
240022
-
Pro
TGG
[ENA]
¡û
>W1610743123
LMSP01000001
Bacillota
Paenibacillus sp. Soil787 [LMSP]
1121465
1121390
-
Pro
TGG
[ENA]
¡û
>W1610743146
LMSP01000024
Bacillota
Paenibacillus sp. Soil787 [LMSP]
547
623
+
Pro
TGG
[ENA]
¡û
>W1610743158
LMSP01000028
Bacillota
Paenibacillus sp. Soil787 [LMSP]
5742
5818
+
Pro
TGG
[ENA]
¡û
>W1610743199
LMSP01000037
Bacillota
Paenibacillus sp. Soil787 [LMSP]
8749
8674
-
Pro
TGG
[ENA]
¡û
>W1611005031
LXQN01000007
Bacillota
Paenibacillus sp. AD87 [LXQN]
4038327
4038254
-
Pro
TGG
[ENA]
¡û
>W1611017320
LYPB01000055
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
7983
7907
-
Pro
TGG
[ENA]
¡û
>W1611017339
LYPB01000066
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
696
773
+
Pro
TGG
[ENA]
¡û
>W1611017370
LYPB01000093
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
65970
65893
-
Pro
TGG
[ENA]
¡û
>W1611017378
LYPB01000097
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
3785
3861
+
Pro
TGG
[ENA]
¡û
>W1611017383
LYPC01000006
Bacillota
Paenibacillus pectinilyticus [LYPC]
4227
4151
-
Pro
TGG
[ENA]
¡û
>W1611017435
LYPC01000016
Bacillota
Paenibacillus pectinilyticus [LYPC]
208586
208510
-
Pro
TGG
[ENA]
¡û
>W1611017458
LYPC01000019
Bacillota
Paenibacillus pectinilyticus [LYPC]
106018
105941
-
Pro
TGG
[ENA]
¡û
>W1611017476
LYPC01000032
Bacillota
Paenibacillus pectinilyticus [LYPC]
306
383
+
Pro
TGG
[ENA]
¡û
>W1710098107
CYUM01000009
Bacillota
Gorillibacterium timonense SN4 [CYUM]
1108
1184
+
Pro
TGG
[ENA]
¡û
>W1710523757
FNIF01000024
Bacillota
Paenibacillus sp. yr247 [FNIF]
1158
1233
+
Pro
TGG
[ENA]
¡û
>W1710523769
FNIF01000026
Bacillota
Paenibacillus sp. yr247 [FNIF]
62284
62208
-
Pro
TGG
[ENA]
¡û
>W1710523775
FNIF01000029
Bacillota
Paenibacillus sp. yr247 [FNIF]
441
516
+
Pro
TGG
[ENA]
¡û
>W1710523800
FNIF01000043
Bacillota
Paenibacillus sp. yr247 [FNIF]
17695
17622
-
Pro
TGG
[ENA]
¡û
>W1710535918
FNSW01000001
Bacillota
Paenibacillus sp. GP183 [FNSW]
4404810
4404886
+
Pro
TGG
[ENA]
¡û
>W1710535961
FNSW01000001
Bacillota
Paenibacillus sp. GP183 [FNSW]
3207559
3207483
-
Pro
TGG
[ENA]
¡û
>W1710544928
FOBD01000015
Bacillota
Paenibacillus sp. OK003 [FOBD]
107434
107361
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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