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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146971 (14 seq.)
>WENV180359386
OBNR01064602
[OBNR] marine metagenome; Seawater_00002010_00002149
319
242
-
Val
TAC
[ENA]
¡û
>WENV180361519
OBNV01060154
[OBNV] marine metagenome; ENVO:00002042
88
165
+
Val
TAC
[ENA]
¡û
>WENV180367943
OBOF01011870
[OBOF] marine metagenome; ENVO:00002010
501
425
-
Val
TAC
[ENA]
¡û
>WENV180374304
OBOJ01163963
[OBOJ] marine metagenome; seawater
200
277
+
Val
TAC
[ENA]
¡û
>WENV180384412
OBOX01042361
[OBOX] marine metagenome; Sterile flask
236
161
-
Val
TAC
[ENA]
¡û
>WENV170119383
CENJ01137654
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
568
645
+
Val
TAC
[ENA]
¡û
>WENV170119598
CENJ01153902
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
8084
8161
+
Val
TAC
[ENA]
¡û
>WENV170233622
CEQJ01049117
[CEQJ] marine metagenome genome assembly TARA_076_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
151
226
+
Val
TAC
[ENA]
¡û
>WENV170524825
CEWH01052606
[CEWH] marine metagenome genome assembly TARA_109_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
195
118
-
Val
TAC
[ENA]
¡û
>WENV170767498
LXNH01002120
[LXNH] seawater metagenome; marine seawater
4919
4996
+
Val
TAC
[ENA]
¡û
>WENV170789910
MDSV01057463
[MDSV] marine metagenome; seawater
2813
2888
+
Val
TAC
[ENA]
¡û
>WENV170838987
MDSZ01177674
[MDSZ] marine metagenome; seawater
2251
2176
-
Val
TAC
[ENA]
¡û
>WENV170894425
MDTD01065313
[MDTD] marine metagenome; seawater
1090
1165
+
Val
TAC
[ENA]
¡û
>WENV170924638
MDTG01069171
[MDTG] marine metagenome; seawater
19926
20003
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK