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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147013 (34 seq.)
>W1710899417
LNIY01000035
Alphaproteobacteria
Caulobacter vibrioides [LNIY]
75774
75850
+
Arg
TCT
[ENA]
¡û
>W1711074010
LSJD01000048
Alphaproteobacteria
Caulobacter sp. CCH5-E12 [LSJD]
1843
1919
+
Arg
TCT
[ENA]
¡û
>C005343
AE005673
Alphaproteobacteria
Caulobacter vibrioides CB15 [AE005673]
1540882
1540958
+
Arg
TCT
[Ensembl]
¡û
>WENV181222975
OFDC01000891
[OFDC] hot springs metagenome; Water
12946
13022
+
Arg
TCT
[ENA]
¢þ
>WENV181227432
OFDN01010188
[OFDN] hot springs metagenome; Water
2648
2724
+
Arg
TCT
[ENA]
¢þ
>WENV183730264
PJTR01009825
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
378
454
+
Arg
TCT
[ENA]
¢þ
>WENV183731795
PJTT01000187
[PJTT] soil metagenome; Soil (2) enriched on wood chips
91064
90988
-
Arg
TCT
[ENA]
¢þ
>WENV183743130
PJUJ01000047
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
154520
154444
-
Arg
TCT
[ENA]
¢þ
>WENV183743239
PJUJ01000199
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
11259
11335
+
Arg
TCT
[ENA]
¢þ
>WENV183744003
PJUK01000118
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
52901
52825
-
Arg
TCT
[ENA]
¢þ
>WENV183744682
PJUL01000063
[PJUL] feces metagenome; Chicken feces enriched on filter paper
154499
154423
-
Arg
TCT
[ENA]
¢þ
>WENV183744817
PJUL01000287
[PJUL] feces metagenome; Chicken feces enriched on filter paper
8899
8975
+
Arg
TCT
[ENA]
¢þ
>C181078830
CP023313
Alphaproteobacteria
Caulobacter vibrioides CB2 [CP023313]
1521585
1521661
+
Arg
TCT
-
¡û
>C181078881
CP023314
Alphaproteobacteria
Caulobacter vibrioides CB1 [CP023314]
1567049
1567125
+
Arg
TCT
-
¡û
>C181078938
CP023315
Alphaproteobacteria
Caulobacter vibrioides CB13b1a [CP023315]
1871198
1871274
+
Arg
TCT
-
¡û
>C181160464
CP027850
Alphaproteobacteria
Caulobacter segnis TK0059 [CP027850]
1799243
1799319
+
Arg
TCT
-
¡û
>C191040439
CP026100
Alphaproteobacteria
Caulobacter flavus RHGG3 [CP026100]
4893585
4893509
-
Arg
TCT
-
¡û
>C191114309
CP033875
Alphaproteobacteria
Caulobacter sp. FWC26 [CP033875]
2595501
2595425
-
Arg
TCT
-
¡û
>C191119765
CP034122
Alphaproteobacteria
Caulobacter vibrioides CB2A [CP034122]
1563127
1563203
+
Arg
TCT
-
¡û
>C09103127
CP001340
Alphaproteobacteria
Caulobacter vibrioides NA1000 [CP001340]
1566858
1566934
+
Arg
TCT
[Ensembl]
¡û
>W1810069364
PEBG01000001
Alphaproteobacteria
Caulobacter sp. FWC26 [PEBG]
2829969
2830045
+
Arg
TCT
[ENA]
¡û
>W1810177597
PJRQ01000038
Alphaproteobacteria
Caulobacter flavus CGMCC1 15093 [PJRQ]
106794
106718
-
Arg
TCT
[ENA]
¡û
>W1810177630
PJRR01000007
Alphaproteobacteria
Caulobacter vibrioides DSM 9893 [PJRR]
46374
46450
+
Arg
TCT
[ENA]
¡û
>W1810177710
PJRS01000041
Alphaproteobacteria
Caulobacter zeae 410 [PJRS]
160253
160329
+
Arg
TCT
[ENA]
¡û
>W1810543637
QDKO01000015
Alphaproteobacteria
Caulobacter radicis 695 [QDKO]
59092
59016
-
Arg
TCT
[ENA]
¡û
>W1810543677
QDKP01000010
Alphaproteobacteria
Caulobacter radicis 736 [QDKP]
76004
76080
+
Arg
TCT
[ENA]
¡û
>W1810543776
QDKQ01000077
Alphaproteobacteria
Caulobacter endophyticus 774 [QDKQ]
70126
70202
+
Arg
TCT
[ENA]
¡û
>W1810625709
QHJY01000198
Alphaproteobacteria
Caulobacter sp. D5 [QHJY]
1506
1582
+
Arg
TCT
[ENA]
¡û
>W1810625734
QHJZ01000103
Alphaproteobacteria
Caulobacter sp. D4A [QHJZ]
3382
3458
+
Arg
TCT
[ENA]
¡û
>W10109898
ADBN01000008
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [ADBN]
139400
139324
-
Arg
TCT
[ENA]
¡û
>W11112335
ADBN01000008
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [ADBN]
139400
139324
-
Arg
TCT
[ENA]
¡û
>C121001837
CP002008
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [CP002008]
1799325
1799401
+
Arg
TCT
[Ensembl]
¡û
>W1610759820
LNIY01000035
Alphaproteobacteria
Caulobacter vibrioides [LNIY]
75774
75850
+
Arg
TCT
[ENA]
¡û
>W1610913315
LSJD01000048
Alphaproteobacteria
Caulobacter sp. CCH5-E12 [LSJD]
1843
1919
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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