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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147049 (7 seq.)
>WENV181415522
OGCL01013384
[OGCL] hot springs metagenome; Hot spring water
767
844
+
Glu
TTC
[ENA]
¡û
>WENV170369824
CETR01037230
[CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
117
194
+
Glu
TTC
[ENA]
¡û
>WENV170434671
CEUS01273889
[CEUS] marine metagenome genome assembly TARA_125_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
7031
7108
+
Glu
TTC
[ENA]
¡û
>WENV170456783
CEVA01231672
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
12645
12568
-
Glu
TTC
[ENA]
¡û
>WENV170771667
LXNI01002737
[LXNI] sponge metagenome; marine sponge reef
1690
1613
-
Glu
TTC
[ENA]
¡û
>WENV170773400
LXNJ01005170
[LXNJ] sponge metagenome; marine sponge reef
4786
4709
-
Glu
TTC
[ENA]
¡û
>WENV170960173
MKWU01017948
[MKWU] sponge metagenome;
961
1038
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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