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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147146 (8 seq.)
>WENV170984171
MWVV01187556
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
149
72
-
Val
GAC
[ENA]
¡û
>WENV170984273
MWVV01218262
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
323
248
-
Val
GAC
[ENA]
¡û
>WENV170986751
MWVX01074582
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
607
532
-
Val
GAC
[ENA]
¡û
>WENV170990233
MWWA01000020
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
12782
12859
+
Val
GAC
[ENA]
¡û
>WENV170990237
MWWA01000029
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
46183
46108
-
Val
GAC
[ENA]
¡û
>WENV170995291
MWWF01000151
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
2104
2179
+
Val
GAC
[ENA]
¡û
>W2011694115
STFF01000002
Bacteroidota
Niastella sp. HX-16-21 [STFF]
50445
50520
+
Val
GAC
[ENA]
¡û
>C241065995
CP042433
Bacteroidota
Flavisolibacter ginsenosidimutans Gsoil 636 [CP042433]
2163945
2163870
-
Val
GAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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