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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147152 (42 seq.)
>WENV170956295
MJUN01016487
[MJUN] soil metagenome; viral particles from soil sample TG1
20
97
+
Lys
TTT
[ENA]
¡û
>WENV170980984
MWVT01014206
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
125
202
+
Lys
TTT
[ENA]
¡û
>WENV170981033
MWVT01018991
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
210
133
-
Lys
TTT
[ENA]
¡û
>WENV170981304
MWVT01062730
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
103
26
-
Lys
TTT
[ENA]
¡û
>WENV170981456
MWVT01096934
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
315
392
+
Lys
TTT
[ENA]
¡û
>WENV170981545
MWVT01126194
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
129
206
+
Lys
TTT
[ENA]
¡û
>WENV170981624
MWVT01152259
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
73
150
+
Lys
TTT
[ENA]
¡û
>WENV170981716
MWVT01182592
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
214
291
+
Lys
TTT
[ENA]
¡û
>WENV170982762
MWVV01000003
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
7205
7282
+
Lys
TTT
[ENA]
¡û
>WENV170982915
MWVV01000999
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
2252
2175
-
Lys
TTT
[ENA]
¡û
>WENV170983289
MWVV01018359
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
241
318
+
Lys
TTT
[ENA]
¡û
>WENV170983414
MWVV01031581
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
945
1022
+
Lys
TTT
[ENA]
¡û
>WENV170983576
MWVV01054628
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
662
585
-
Lys
TTT
[ENA]
¡û
>WENV170983601
MWVV01057829
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
571
648
+
Lys
TTT
[ENA]
¡û
>WENV170984021
MWVV01146352
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
328
251
-
Lys
TTT
[ENA]
¡û
>WENV170987148
MWVX01133542
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
394
471
+
Lys
TTT
[ENA]
¡û
>WENV170987347
MWVX01174160
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
461
384
-
Lys
TTT
[ENA]
¡û
>WENV170988180
MWVX01398726
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
150
227
+
Lys
TTT
[ENA]
¡û
>WENV170988808
MWVY01009385
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
666
743
+
Lys
TTT
[ENA]
¡û
>WENV170989155
MWVZ01000483
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
3173
3250
+
Lys
TTT
[ENA]
¡û
>WENV170989321
MWVZ01012877
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
1221
1144
-
Lys
TTT
[ENA]
¡û
>WENV170990448
MWWA01007020
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
1231
1154
-
Lys
TTT
[ENA]
¡û
>WENV170990761
MWWA01041059
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
151
228
+
Lys
TTT
[ENA]
¡û
>WENV170991265
MWWA01149970
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
227
150
-
Lys
TTT
[ENA]
¡û
>WENV170992486
MWWB01035070
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
814
737
-
Lys
TTT
[ENA]
¡û
>WENV170992692
MWWB01068095
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
470
547
+
Lys
TTT
[ENA]
¡û
>WENV170993161
MWWB01202246
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
114
37
-
Lys
TTT
[ENA]
¡û
>WENV170993583
MWWB01362027
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
202
125
-
Lys
TTT
[ENA]
¡û
>WENV170994019
MWWC01079027
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
237
160
-
Lys
TTT
[ENA]
¡û
>WENV170994098
MWWD01011998
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
43
120
+
Lys
TTT
[ENA]
¡û
>WENV170994099
MWWD01011998
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
709
786
+
Lys
TTT
[ENA]
¡û
>WENV170994129
MWWD01017026
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
150
227
+
Lys
TTT
[ENA]
¡û
>WENV170994849
MWWE01069679
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
365
288
-
Lys
TTT
[ENA]
¡û
>WENV170995629
MWWF01029642
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
8
85
+
Lys
TTT
[ENA]
¡û
>WENV170996527
MWWF01309168
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
269
192
-
Lys
TTT
[ENA]
¡û
>WENV170996854
MWWG01000606
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
11
88
+
Lys
TTT
[ENA]
¡û
>WENV170996865
MWWG01000606
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
6116
6193
+
Lys
TTT
[ENA]
¡û
>WENV170997567
MWWG01188666
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
310
387
+
Lys
TTT
[ENA]
¡û
>WENV170997652
MWWG01225253
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
313
236
-
Lys
TTT
[ENA]
¡û
>WENV170998710
MWWJ01085001
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
462
385
-
Lys
TTT
[ENA]
¡û
>WENV170999591
MWWK01106829
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
294
371
+
Lys
TTT
[ENA]
¡û
>WENV170999592
MWWK01106903
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
152
229
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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