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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147185 (29 seq.)
>W1711071226
LSGP01000006
Bacillota
Anaerosporomusa subterranea [LSGP]
37373
37297
-
Arg
CCT
[ENA]
¡û
>C171098276
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
148356
148432
+
Arg
CCT
-
¡û
>W131219078
ATYG01000010
Bacillota
Carboxydothermus ferrireducens DSM 11255 [ATYG]
74074
74150
+
Arg
CCT
[ENA]
¡û
>W131242992
CAOS01000011
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
69045
69121
+
Arg
CCT
[ENA]
¡û
>C005888
CP000141
Bacillota
Carboxydothermus hydrogenoformans Z-2901 [CP000141]
2377535
2377459
-
Arg
CCT
[Ensembl]
¡û
>C007985
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
25960
26036
+
Arg
CCT
[Ensembl]
¡û
>WENV183745916
POVV01001868
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
5817
5893
+
Arg
CCT
[ENA]
¢þ
>WENV170003671
AGTN01413392
[AGTN] bioreactor metagenome; poplar biomass
472
396
-
Arg
CCT
[ENA]
¢þ
>WENV170668451
LADL02003887
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
137
213
+
Arg
CCT
[ENA]
¢þ
>C181058781
CP022121
Bacillota
Dehalobacterium formicoaceticum DMC [CP022121]
692783
692707
-
Arg
CCT
-
¡û
>C191002349
AP018449
Bacillota
Methylomusa anaerophila MMFC1 [AP018449]
1690600
1690676
+
Arg
CCT
-
¡û
>W09105183
AAOP01000047
Bacillota
Desulforamulus reducens MI-1 [AAOP]
12127
12051
-
Arg
CCT
[ENA]
¡û
>W09108848
ABTQ01000020
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
46042
45966
-
Arg
CCT
[ENA]
¡û
>W1910004779
AWQQ01000062
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
11219
11295
+
Arg
CCT
[ENA]
¡û
>W1910004985
AWVY01000052
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
170970
170894
-
Arg
CCT
[ENA]
¡û
>C10104826
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
4513838
4513762
-
Arg
CCT
[Ensembl]
¡û
>C11106898
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
27791
27867
+
Arg
CCT
[Ensembl]
¡û
>C11107312
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
30384
30460
+
Arg
CCT
[Ensembl]
¡û
>W1511564173
LADN01000009
Bacillota
Peptococcaceae bacterium BRH_c4a [LADN]
41485
41409
-
Arg
CCT
[ENA]
¡û
>W1511564232
LADO01000028
Bacillota
Peptococcaceae bacterium BRH_c4b [LADO]
1771
1847
+
Arg
CCT
[ENA]
¡û
>W11150365
AEVP01000004
Bacillota
Desulfotomaculum nigrificans DSM 574 [AEVP]
115041
114965
-
Arg
CCT
[ENA]
¡û
>W11161320
AFGF01000081
Bacillota
Acetonema longum DSM 6540 [AFGF]
11371
11295
-
Arg
CCT
[ENA]
¡û
>W1610910486
LSGP01000006
Bacillota
Anaerosporomusa subterranea [LSGP]
37373
37297
-
Arg
CCT
[ENA]
¡û
>W1710081800
BDGJ01000168
Bacillota
Calderihabitans maritimus [BDGJ]
8535
8459
-
Arg
CCT
[ENA]
¡û
>W1710083545
BDJK01000009
Bacillota
Carboxydothermus pertinax [BDJK]
51016
51092
+
Arg
CCT
[ENA]
¡û
>W1710083582
BDJL01000001
Bacillota
Carboxydothermus islandicus [BDJL]
35590
35666
+
Arg
CCT
[ENA]
¡û
>W1710583636
FQUY01000012
Bacillota
Desulforamulus putei DSM 12395 [FQUY]
10090
10166
+
Arg
CCT
[ENA]
¡û
>W1710586497
FQXF01000046
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
138
214
+
Arg
CCT
[ENA]
¡û
>W1710590045
FRAR01000011
Bacillota
Desulforamulus aeronauticus DSM 10349 [FRAR]
9215
9291
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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