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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147215 (53 seq.)
>W1711018568
LQXA01000035
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
237828
237754
-
Met
CAT
[ENA]
¡û
>W1711079599
LSOE01000006
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
72645
72719
+
Met
CAT
[ENA]
¡û
>W1711357186
MDHB01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
564304
564230
-
Met
CAT
[ENA]
¡û
>W1711357217
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
1783138
1783212
+
Met
CAT
[ENA]
¡û
>W1711357250
MDHD01000028
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
30820
30894
+
Met
CAT
[ENA]
¡û
>W1711357326
MDHE01000394
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
13167
13241
+
Met
CAT
[ENA]
¡û
>W1711357341
MDHF01000027
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
16438
16364
-
Met
CAT
[ENA]
¡û
>W1711357382
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
169483
169557
+
Met
CAT
[ENA]
¡û
>W1711357456
MDHH01000005
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
17226
17300
+
Met
CAT
[ENA]
¡û
>W1711357486
MDHI01000004
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
1362060
1362134
+
Met
CAT
[ENA]
¡û
>W1711357585
MDHK01000042
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
54340
54414
+
Met
CAT
[ENA]
¡û
>W1711357622
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
1828016
1828090
+
Met
CAT
[ENA]
¡û
>W1711357666
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
1793384
1793458
+
Met
CAT
[ENA]
¡û
>W1711360721
MDJW01000012
Actinomycetota
Clavibacter michiganensis [MDJW]
301105
301031
-
Met
CAT
[ENA]
¡û
>W1711360810
MDJY01000059
Actinomycetota
Clavibacter michiganensis [MDJY]
5454
5528
+
Met
CAT
[ENA]
¡û
>C006148
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
1809026
1809099
+
Met
CAT
[Ensembl]
¡û
>w013960
AAOB01000003
Actinomycetota
marine actinobacterium PHSC20C1 [AAOB]
50555
50482
-
Met
CAT
[ENA]
¡û
>WENV180016700
FSVT01000891
[FSVT] metagenome; soil
3125
3051
-
Ile2
CAT
[ENA]
¢þ
>WENV180017388
FSWU01000477
[FSWU] metagenome; soil
2973
2897
-
Ile2
CAT
[ENA]
¢þ
>WENV180018606
FSZY01000057
[FSZY] metagenome; soil
1034
960
-
Ile2
CAT
[ENA]
¢þ
>WENV180026475
FTIT01480797
[FTIT] metagenome; soil
63
139
+
Ile2
CAT
[ENA]
¢þ
>W141212804
AZQZ01000045
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
435571
435497
-
Met
CAT
[ENA]
¡û
>C08003551
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
1660977
1661051
+
Met
CAT
[Ensembl]
¡û
>WENV183697426
OUNJ010794166
[OUNJ] metagenome; soil
95
169
+
Ile2
CAT
[ENA]
¢þ
>WENV170700604
LIDZ01015706
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
4164
4238
+
Met
CAT
[ENA]
¢þ
>WENV170784211
MCHG01000125
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
39974
39898
-
Met
CAT
[ENA]
¢þ
>C181048904
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
1629291
1629217
-
Met
CAT
-
¡û
>C181048926
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
1561834
1561908
+
Met
CAT
-
¡û
>C191139351
CP035375
Actinomycetota
Salinibacterium sp. UTAS2018 [CP035375]
745486
745412
-
Met
CAT
-
¡û
>W1910839656
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
661495
661569
+
Met
CAT
[ENA]
¡û
>W1910839699
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
277291
277365
+
Met
CAT
[ENA]
¡û
>W1910839766
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
1870889
1870815
-
Met
CAT
[ENA]
¡û
>W1910839810
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
2555021
2554947
-
Met
CAT
[ENA]
¡û
>W1910839853
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
2668798
2668724
-
Met
CAT
[ENA]
¡û
>W1911497884
OCST01000003
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
485353
485427
+
Met
CAT
[ENA]
¡û
>W1911748148
QWDZ01000052
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
7936
7862
-
Met
CAT
[ENA]
¡û
>W1911748206
QWEA01000585
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
1431
1505
+
Met
CAT
[ENA]
¡û
>W1911748221
QWEB01000036
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
4001
4075
+
Met
CAT
[ENA]
¡û
>W1911748293
QWEC01000179
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
3980
4054
+
Met
CAT
[ENA]
¡û
>W1911748303
QWED01000005
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
3837
3913
+
Met
CAT
[ENA]
¡û
>W1911748354
QWEE01000023
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
11608
11534
-
Met
CAT
[ENA]
¡û
>W1911749584
QWGS01000076
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
3941
4015
+
Met
CAT
[ENA]
¡û
>W1911749715
QWGV01000077
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
3969
4043
+
Met
CAT
[ENA]
¡û
>W1810277218
PSTR01000001
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
22194
22268
+
Met
CAT
[ENA]
¡û
>W1810277416
PSTV01000017
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
5730
5804
+
Met
CAT
[ENA]
¡û
>W1810277467
PSTW01000021
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
22263
22337
+
Met
CAT
[ENA]
¡û
>C151075641
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
1488594
1488668
+
Met
CAT
[Ensembl]
¡û
>W1511570088
LAKL01000016
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
265046
265120
+
Met
CAT
[ENA]
¡û
>C131019535
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
1644485
1644559
+
Met
CAT
[Ensembl]
¡û
>W1610867044
LQXA01000035
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
237828
237754
-
Met
CAT
[ENA]
¡û
>W1610918509
LSOE01000006
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
72645
72719
+
Met
CAT
[ENA]
¡û
>W1710520635
FNFU01000003
Actinomycetota
Cryobacterium psychrotolerans [FNFU]
4301
4375
+
Met
CAT
[ENA]
¡û
>W1710604650
FVZG01000001
Actinomycetota
Clavibacter michiganensis [FVZG]
1584019
1584093
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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