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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147282 (127 seq.)
>W1710897136
LNHT01000063
Gammaproteobacteria
Proteus mirabilis [LNHT]
115017
115093
+
Pro
GGG
[ENA]
¡û
>W1711005369
LQNN01000013
Gammaproteobacteria
Proteus mirabilis [LQNN]
89818
89894
+
Pro
GGG
[ENA]
¡û
>W1711005454
LQNO01000024
Gammaproteobacteria
Proteus mirabilis [LQNO]
58708
58632
-
Pro
GGG
[ENA]
¡û
>W1711009987
LQQZ01000005
Gammaproteobacteria
Proteus mirabilis [LQQZ]
55897
55821
-
Pro
GGG
[ENA]
¡û
>W1711071354
LSGS01000060
Gammaproteobacteria
Proteus mirabilis [LSGS]
32241
32165
-
Pro
GGG
[ENA]
¡û
>W1711091276
LTBK01000021
Gammaproteobacteria
Proteus mirabilis [LTBK]
68147
68071
-
Pro
GGG
[ENA]
¡û
>W1711115606
LUAI01000009
Gammaproteobacteria
Proteus sp. HMSC14B05 [LUAI]
62967
62891
-
Pro
GGG
[ENA]
¡û
>W1711120228
LUFT01000025
Gammaproteobacteria
Proteus mirabilis [LUFT]
408184
408260
+
Pro
GGG
[ENA]
¡û
>W1711173599
LWDB01000005
Gammaproteobacteria
Proteus mirabilis [LWDB]
65857
65781
-
Pro
GGG
[ENA]
¡û
>W1711193296
LWUL01000045
Gammaproteobacteria
Proteus mirabilis [LWUL]
61083
61007
-
Pro
GGG
[ENA]
¡û
>W1711193411
LWUM01000136
Gammaproteobacteria
Proteus mirabilis [LWUM]
61083
61007
-
Pro
GGG
[ENA]
¡û
>W1711339032
MBTY01000008
Gammaproteobacteria
Proteus mirabilis [MBTY]
114689
114765
+
Pro
GGG
[ENA]
¡û
>W1711383796
MECU01000017
Gammaproteobacteria
Shigella sp. FC130 [MECU]
5843
5767
-
Pro
GGG
[ENA]
¡û
>W1711430120
MIIW01000032
Gammaproteobacteria
Shigella sp. FC1655 [MIIW]
5869
5793
-
Pro
GGG
[ENA]
¡û
>W1711430348
MIIZ01001287
Gammaproteobacteria
Shigella sp. FC1967 [MIIZ]
2893
2817
-
Pro
GGG
[ENA]
¡û
>C171103401
CP020052
Gammaproteobacteria
Proteus mirabilis AR_0059 [CP020052]
3795873
3795949
+
Pro
GGG
-
¡û
>C171120834
CP021550
Gammaproteobacteria
Proteus mirabilis AR_0159 [CP021550]
788673
788749
+
Pro
GGG
-
¡û
>C171121694
CP021694
Gammaproteobacteria
Proteus mirabilis AR_0155 [CP021694]
3059576
3059652
+
Pro
GGG
-
¡û
>C171124302
CP021852
Gammaproteobacteria
Proteus mirabilis AR_0156 [CP021852]
3723605
3723529
-
Pro
GGG
-
¡û
>W131055304
ANBT01000022
Gammaproteobacteria
Proteus mirabilis C05028 [ANBT]
112666
112742
+
Pro
GGG
[ENA]
¡û
>W131098431
AORN01000013
Gammaproteobacteria
Proteus mirabilis PR03 [AORN]
114494
114570
+
Pro
GGG
[ENA]
¡û
>WENV180456267
OBXQ01000569
[OBXQ] human gut metagenome; faeces
1174
1098
-
Pro
GGG
[ENA]
¢þ
>WENV180456609
OBXR01000037
[OBXR] human gut metagenome; faeces
90000
90076
+
Pro
GGG
[ENA]
¢þ
>W141043806
AMGT01000016
Gammaproteobacteria
Proteus mirabilis WGLW6 [AMGT]
108654
108578
-
Pro
GGG
[ENA]
¡û
>W141043902
AMGU01000017
Gammaproteobacteria
Proteus mirabilis WGLW4 [AMGU]
312623
312699
+
Pro
GGG
[ENA]
¡û
>W141148072
AWXP01000006
Gammaproteobacteria
Proteus hauseri ZMd44 [AWXP]
361499
361423
-
Pro
GGG
[ENA]
¡û
>WENV182798705
OJTN01000007
[OJTN] human gut metagenome; human gut
103869
103945
+
Pro
GGG
[ENA]
¢þ
>WENV182798842
OJTO01000098
[OJTO] human gut metagenome; human gut
3615
3539
-
Pro
GGG
[ENA]
¢þ
>WENV182809977
OJWU01000988
[OJWU] human gut metagenome; human gut
1310
1234
-
Pro
GGG
[ENA]
¢þ
>WENV182810131
OJWX01000198
[OJWX] human gut metagenome; human gut
7739
7815
+
Pro
GGG
[ENA]
¢þ
>WENV182856805
OKNQ01000188
[OKNQ] human gut metagenome; human gut
19526
19602
+
Pro
GGG
[ENA]
¢þ
>C08007547
AM942759
Gammaproteobacteria
Proteus mirabilis HI4320 [AM942759]
904833
904760
-
Pro
GGG
[Ensembl]
¡û
>WENV182954451
OKWA01001513
[OKWA] human gut metagenome; human gut
7704
7780
+
Pro
GGG
[ENA]
¢þ
>WENV183772248
PPYF01016695
[PPYF] human gut metagenome; stool from patient with Crohn's disease
60464
60388
-
Pro
GGG
[ENA]
¢þ
>WENV183788589
PPYF01370188
[PPYF] human gut metagenome; stool from patient with Crohn's disease
32860
32784
-
Pro
GGG
[ENA]
¢þ
>C181023280
CP017082
Gammaproteobacteria
Proteus mirabilis T21 [CP017082]
3732541
3732617
+
Pro
GGG
-
¡û
>C181023401
CP017085
Gammaproteobacteria
Proteus mirabilis T18 [CP017085]
1872334
1872258
-
Pro
GGG
-
¡û
>C181125671
CP026044
Gammaproteobacteria
Proteus mirabilis FDAARGOS_60 [CP026044]
2166177
2166253
+
Pro
GGG
-
¡û
>C181126114
CP026051
Gammaproteobacteria
Proteus mirabilis FDAARGOS_67 [CP026051]
3911900
3911824
-
Pro
GGG
-
¡û
>C181126515
CP026059
Gammaproteobacteria
Proteus mirabilis FDAARGOS_80 [CP026059]
1303332
1303256
-
Pro
GGG
-
¡û
>C181126556
CP026062
Gammaproteobacteria
Proteus mirabilis FDAARGOS_81 [CP026062]
2430931
2431007
+
Pro
GGG
-
¡û
>C181134928
CP026571
Gammaproteobacteria
Proteus mirabilis BC11-24 [CP026571]
1433303
1433227
-
Pro
GGG
-
¡û
>C181135098
CP026581
Gammaproteobacteria
Proteus mirabilis [CP026581]
1520358
1520282
-
Pro
GGG
-
¡û
>C181174843
CP029133
Gammaproteobacteria
Proteus mirabilis AR379 [CP029133]
1886543
1886619
+
Pro
GGG
-
¡û
>C181184256
CP029725
Gammaproteobacteria
Proteus mirabilis AR_0029 [CP029725]
1487185
1487261
+
Pro
GGG
-
¡û
>C191118946
CP034090
Gammaproteobacteria
Proteus mirabilis PmSC1111 [CP034090]
1759694
1759770
+
Pro
GGG
-
¡û
>C191119078
CP034091
Gammaproteobacteria
Proteus mirabilis PmBC1123 [CP034091]
1452801
1452725
-
Pro
GGG
-
¡û
>C191200009
LR134205
Gammaproteobacteria
Proteus mirabilis NCTC4199 [LR134205]
1428718
1428642
-
Pro
GGG
-
¡û
>W09127728
ACLE01000072
Gammaproteobacteria
Proteus mirabilis ATCC 29906 [ACLE]
22758
22682
-
Pro
GGG
[ENA]
¡û
>W141790114
JOVJ01000009
Gammaproteobacteria
Proteus mirabilis [JOVJ]
109015
108939
-
Pro
GGG
[ENA]
¡û
>C141003362
CP004022
Gammaproteobacteria
Proteus mirabilis BB2000 [CP004022]
1052290
1052214
-
Pro
GGG
[Ensembl]
¡û
>W1910905408
NGVR01000006
Gammaproteobacteria
Proteus columbae 08MAS2615 [NGVR]
41497
41573
+
Pro
GGG
[ENA]
¡û
>W1911137182
NOWA01000001
Gammaproteobacteria
Proteus mirabilis PM187 [NOWA]
42228
42152
-
Pro
GGG
[ENA]
¡û
>W1911137275
NOWB01000008
Gammaproteobacteria
Proteus mirabilis PM185 [NOWB]
98399
98323
-
Pro
GGG
[ENA]
¡û
>W1911429370
NXKC01000009
Gammaproteobacteria
Proteus mirabilis PM005 [NXKC]
98071
97995
-
Pro
GGG
[ENA]
¡û
>W1911580929
PENT01000006
Gammaproteobacteria
Proteus genomosp. 6 6 str. ATCC 51471 [PENT]
109742
109666
-
Pro
GGG
[ENA]
¡û
>W1911770162
QXIN01000016
Gammaproteobacteria
Proteus mirabilis PMWJ [QXIN]
79089
79013
-
Pro
GGG
[ENA]
¡û
>W1810006265
BFCK01000398
Gammaproteobacteria
Proteus mirabilis MH13-009N [BFCK]
7877
7953
+
Pro
GGG
[ENA]
¡û
>W1810011608
BGKS01000015
Gammaproteobacteria
Proteus mirabilis TUM11567 [BGKS]
9518
9594
+
Pro
GGG
[ENA]
¡û
>W1810011679
BGKT01000008
Gammaproteobacteria
Proteus mirabilis TUM11568 [BGKT]
44898
44822
-
Pro
GGG
[ENA]
¡û
>W1810011757
BGKU01000007
Gammaproteobacteria
Proteus mirabilis TUM11569 [BGKU]
27291
27367
+
Pro
GGG
[ENA]
¡û
>W1810011837
BGKV01000017
Gammaproteobacteria
Proteus mirabilis TUM11570 [BGKV]
1281
1205
-
Pro
GGG
[ENA]
¡û
>W1810011933
BGKW01000011
Gammaproteobacteria
Proteus mirabilis TUM11571 [BGKW]
82257
82333
+
Pro
GGG
[ENA]
¡û
>W1810014450
BGMB01000035
Gammaproteobacteria
Proteus mirabilis TUM4660 [BGMB]
35872
35796
-
Pro
GGG
[ENA]
¡û
>W1810081002
PENW01000027
Gammaproteobacteria
Proteus cibi FJ2001126-3 [PENW]
26579
26503
-
Pro
GGG
[ENA]
¡û
>W1810081251
PENZ01000045
Gammaproteobacteria
Proteus faecis TJ1636 [PENZ]
42512
42588
+
Pro
GGG
[ENA]
¡û
>W1810189007
PKIT01000001
Gammaproteobacteria
Proteus mirabilis UMB0315 [PKIT]
443663
443587
-
Pro
GGG
[ENA]
¡û
>W1810295132
PTIJ01000005
Gammaproteobacteria
Proteus mirabilis 2150/3191 [PTIJ]
24618
24694
+
Pro
GGG
[ENA]
¡û
>W1810335205
PURY01000002
Gammaproteobacteria
Proteus mirabilis GER_MD10_1505_Pmi_049 [PURY]
147544
147468
-
Pro
GGG
[ENA]
¡û
>W1810340553
PUXR01000007
Gammaproteobacteria
Proteus mirabilis PmPHI [PUXR]
101442
101518
+
Pro
GGG
[ENA]
¡û
>W1810535005
QDAK01000003
Gammaproteobacteria
Proteus mirabilis AR_0377 [QDAK]
2842449
2842373
-
Pro
GGG
[ENA]
¡û
>W1810583143
QEXA01000001
Gammaproteobacteria
Proteus faecis 08MAS1600 [QEXA]
733660
733736
+
Pro
GGG
[ENA]
¡û
>W1810595601
QGGA01000012
Gammaproteobacteria
Proteus mirabilis LBUEL-H11 [QGGA]
79822
79898
+
Pro
GGG
[ENA]
¡û
>W1810626577
QHLF01000008
Gammaproteobacteria
Proteus mirabilis 11985-2-3 [QHLF]
94749
94825
+
Pro
GGG
[ENA]
¡û
>C151097005
CP012674
Gammaproteobacteria
Proteus mirabilis CYPM1 [CP012674]
1434813
1434737
-
Pro
GGG
-
¡û
>C151097085
CP012675
Gammaproteobacteria
Proteus mirabilis CYPV1 [CP012675]
1436975
1436899
-
Pro
GGG
-
¡û
>W1511362261
JSCB01000083
Gammaproteobacteria
Proteus mirabilis Pm-Oxa48 [JSCB]
12796
12720
-
Pro
GGG
[ENA]
¡û
>W1511394025
JTAW01000008
Gammaproteobacteria
Proteus mirabilis FDAARGOS_85 [JTAW]
1006704
1006628
-
Pro
GGG
[ENA]
¡û
>W1511394274
JTBA01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_81 [JTBA]
2430920
2430996
+
Pro
GGG
[ENA]
¡û
>W1511394399
JTBB01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_80 [JTBB]
1303248
1303172
-
Pro
GGG
[ENA]
¡û
>W1511395720
JTBP01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_67 [JTBP]
3911830
3911754
-
Pro
GGG
[ENA]
¡û
>W1511396279
JTBW01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_60 [JTBW]
2166138
2166214
+
Pro
GGG
[ENA]
¡û
>W1511446670
JUXK01000059
Gammaproteobacteria
Proteus mirabilis 68_PMIR [JUXK]
57031
56955
-
Pro
GGG
[ENA]
¡û
>W1511446832
JUXR01000011
Gammaproteobacteria
Proteus mirabilis 672_PMIR [JUXR]
73
-1
-
Pro
GGG
[ENA]
¡û
>W1511447563
JUYT01000084
Gammaproteobacteria
Proteus mirabilis 646_PMIR [JUYT]
79808
79884
+
Pro
GGG
[ENA]
¡û
>W1511452546
JVEH01000079
Gammaproteobacteria
Proteus mirabilis 51_PMIR [JVEH]
84294
84370
+
Pro
GGG
[ENA]
¡û
>W1511454107
JVFU01000027
Gammaproteobacteria
Proteus mirabilis 47_PMIR [JVFU]
60294
60218
-
Pro
GGG
[ENA]
¡û
>W1511456169
JVHI01000074
Gammaproteobacteria
Proteus mirabilis 430_PMIR [JVHI]
59597
59521
-
Pro
GGG
[ENA]
¡û
>W1511456253
JVHK01000064
Gammaproteobacteria
Proteus mirabilis 429_PMIR [JVHK]
80905
80981
+
Pro
GGG
[ENA]
¡û
>W1511456972
JVHX01000104
Gammaproteobacteria
Proteus mirabilis 418_PMIR [JVHX]
143997
144073
+
Pro
GGG
[ENA]
¡û
>W1511458675
JVJQ01000017
Gammaproteobacteria
Proteus mirabilis 373_PMIR [JVJQ]
80
4
-
Pro
GGG
[ENA]
¡û
>W1511459185
JVKD01000089
Gammaproteobacteria
Proteus mirabilis 360_PMIR [JVKD]
18219
18143
-
Pro
GGG
[ENA]
¡û
>W1511461596
JVMQ01000120
Gammaproteobacteria
Proteus mirabilis 292_PMIR [JVMQ]
79462
79538
+
Pro
GGG
[ENA]
¡û
>W1511467754
JVTJ01000009
Gammaproteobacteria
Proteus mirabilis 1330_PMIR [JVTJ]
21765
21689
-
Pro
GGG
[ENA]
¡û
>W1511467966
JVTO01000260
Gammaproteobacteria
Proteus mirabilis 1326_PMIR [JVTO]
8401
8477
+
Pro
GGG
[ENA]
¡û
>W1511468393
JVUE01000061
Gammaproteobacteria
Proteus mirabilis 1313_PMIR [JVUE]
98871
98795
-
Pro
GGG
[ENA]
¡û
>W1511468505
JVUH01002538
Gammaproteobacteria
Proteus mirabilis 1310_PMIR [JVUH]
1347
1423
+
Pro
GGG
[ENA]
¡û
>W1511469279
JVVD01000095
Gammaproteobacteria
Proteus mirabilis 1293_PMIR [JVVD]
15525
15601
+
Pro
GGG
[ENA]
¡û
>W1511470090
JVWE01000012
Gammaproteobacteria
Proteus mirabilis 127_PMIR [JVWE]
23690
23614
-
Pro
GGG
[ENA]
¡û
>W1511471334
JVXV01000157
Gammaproteobacteria
Proteus mirabilis 1230_SSON [JVXV]
59465
59389
-
Pro
GGG
[ENA]
¡û
>W1511473558
JWAP01000081
Gammaproteobacteria
Proteus mirabilis 1166_PMIR [JWAP]
98875
98799
-
Pro
GGG
[ENA]
¡û
>W1511474099
JWBG01000049
Gammaproteobacteria
Proteus mirabilis 1150_PMIR [JWBG]
80
4
-
Pro
GGG
[ENA]
¡û
>W1511474573
JWBY01000069
Gammaproteobacteria
Proteus mirabilis 1134_PMIR [JWBY]
90483
90559
+
Pro
GGG
[ENA]
¡û
>W1511475095
JWCS01000078
Gammaproteobacteria
Proteus mirabilis 1114_PMIR [JWCS]
79470
79546
+
Pro
GGG
[ENA]
¡û
>W1511574098
LANL01000102
Gammaproteobacteria
Proteus mirabilis 25933 GTA [LANL]
60316
60392
+
Pro
GGG
[ENA]
¡û
>C161086376
CP015347
Gammaproteobacteria
Proteus mirabilis AOUC-001 [CP015347]
2403981
2404057
+
Pro
GGG
-
¡û
>W1610540573
JSUO01000043
Gammaproteobacteria
Proteus mirabilis [JSUO]
858
782
-
Pro
GGG
[ENA]
¡û
>W1610540640
JSUP01000019
Gammaproteobacteria
Proteus mirabilis [JSUP]
513
437
-
Pro
GGG
[ENA]
¡û
>W1610575872
LAGU01000017
Gammaproteobacteria
Proteus mirabilis [LAGU]
106702
106778
+
Pro
GGG
[ENA]
¡û
>W1610610417
LGAY01000072
Gammaproteobacteria
Proteus mirabilis [LGAY]
78412
78336
-
Pro
GGG
[ENA]
¡û
>W1610617210
LGTA01000010
Gammaproteobacteria
Proteus mirabilis [LGTA]
73513
73437
-
Pro
GGG
[ENA]
¡û
>W1610757540
LNHT01000063
Gammaproteobacteria
Proteus mirabilis [LNHT]
115017
115093
+
Pro
GGG
[ENA]
¡û
>W1610856019
LQNN01000013
Gammaproteobacteria
Proteus mirabilis [LQNN]
89818
89894
+
Pro
GGG
[ENA]
¡û
>W1610856104
LQNO01000024
Gammaproteobacteria
Proteus mirabilis [LQNO]
58708
58632
-
Pro
GGG
[ENA]
¡û
>W1610858507
LQQZ01000005
Gammaproteobacteria
Proteus mirabilis [LQQZ]
55897
55821
-
Pro
GGG
[ENA]
¡û
>W1610910614
LSGS01000060
Gammaproteobacteria
Proteus mirabilis [LSGS]
32241
32165
-
Pro
GGG
[ENA]
¡û
>W1610925420
LTBK01000021
Gammaproteobacteria
Proteus mirabilis [LTBK]
68147
68071
-
Pro
GGG
[ENA]
¡û
>W1610982204
LWDB01000005
Gammaproteobacteria
Proteus mirabilis [LWDB]
65857
65781
-
Pro
GGG
[ENA]
¡û
>W1610994011
LWUL01000045
Gammaproteobacteria
Proteus mirabilis [LWUL]
61083
61007
-
Pro
GGG
[ENA]
¡û
>W1610994126
LWUM01000136
Gammaproteobacteria
Proteus mirabilis [LWUM]
61083
61007
-
Pro
GGG
[ENA]
¡û
>W1710513286
FNAA01000010
Gammaproteobacteria
Proteus mirabilis [FNAA]
143313
143389
+
Pro
GGG
[ENA]
¡û
>W1710563257
FOPN01000015
Gammaproteobacteria
Proteus mirabilis [FOPN]
88103
88179
+
Pro
GGG
[ENA]
¡û
>W1710643594
JSUO01000043
Gammaproteobacteria
Proteus mirabilis [JSUO]
858
782
-
Pro
GGG
[ENA]
¡û
>W1710643661
JSUP01000019
Gammaproteobacteria
Proteus mirabilis [JSUP]
513
437
-
Pro
GGG
[ENA]
¡û
>W1710694136
LAGU01000017
Gammaproteobacteria
Proteus mirabilis [LAGU]
106702
106778
+
Pro
GGG
[ENA]
¡û
>W1710731923
LGAY01000072
Gammaproteobacteria
Proteus mirabilis [LGAY]
78412
78336
-
Pro
GGG
[ENA]
¡û
>W1710742824
LGTA01000010
Gammaproteobacteria
Proteus mirabilis [LGTA]
73513
73437
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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