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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147287 (74 seq.)
>W1711175222
LWEP01000492
Alphaproteobacteria
Sulfitobacter sp. HI0021 HI0021 [LWEP]
15885
15961
+
Pro
TGG
[ENA]
¡û
>W1711175268
LWEQ01000473
Alphaproteobacteria
Sulfitobacter sp. HI0023 HI0023 [LWEQ]
3949
3873
-
Pro
TGG
[ENA]
¡û
>W1711175297
LWER01000149
Alphaproteobacteria
Sulfitobacter sp. HI0027 HI0027 [LWER]
12328
12252
-
Pro
TGG
[ENA]
¡û
>W1711175682
LWEX01000141
Alphaproteobacteria
Sulfitobacter sp. HI0040 HI0040 [LWEX]
4130
4206
+
Pro
TGG
[ENA]
¡û
>W1711176068
LWFD01000030
Alphaproteobacteria
Sulfitobacter sp. HI0054 [LWFD]
5215
5291
+
Pro
TGG
[ENA]
¡û
>W1711176872
LWFQ01000143
Alphaproteobacteria
Sulfitobacter sp. HI0076 HI0076 [LWFQ]
4879
4803
-
Pro
TGG
[ENA]
¡û
>W1711177156
LWFW01000114
Alphaproteobacteria
Sulfitobacter sp. HI0082 HI0082 [LWFW]
4873
4797
-
Pro
TGG
[ENA]
¡û
>W1711177213
LWFW01001985
Alphaproteobacteria
Sulfitobacter sp. HI0082 HI0082 [LWFW]
563
487
-
Pro
TGG
[ENA]
¡û
>W1711177829
LWGH01000259
Alphaproteobacteria
Sulfitobacter sp. HI0129 HI0129 [LWGH]
1502
1578
+
Pro
TGG
[ENA]
¡û
>W1711229310
LXYI01000005
Alphaproteobacteria
Sulfitobacter sp. EhC04 [LXYI]
19750
19674
-
Pro
TGG
[ENA]
¡û
>W1711229494
LXYM01000013
Alphaproteobacteria
Sulfitobacter geojensis [LXYM]
22740
22664
-
Pro
TGG
[ENA]
¡û
>C171072505
CP018076
Alphaproteobacteria
Sulfitobacter alexandrii AM1-D1 [CP018076]
2109775
2109699
-
Pro
TGG
-
¡û
>C171092119
CP019312
Alphaproteobacteria
Tateyamaria omphalii DOK1-4 [CP019312]
1657930
1657854
-
Pro
TGG
-
¡û
>C018372
CP000362
Alphaproteobacteria
Roseobacter denitrificans OCh 114 [CP000362]
3062091
3062015
-
Pro
TGG
[Ensembl]
¡û
>W08005752
ABID01000003
Alphaproteobacteria
Sulfitobacter indolifex HEL-45 [ABID]
343569
343496
-
Pro
TGG
[ENA]
¡û
>W08005905
ABIG01000002
Alphaproteobacteria
Roseobacter litoralis Och 149 [ABIG]
4878
4805
-
Pro
TGG
[ENA]
¡û
>WENV182543955
OJBD01003162
[OJBD] seawater metagenome; Sea water
1083
1007
-
Pro
TGG
[ENA]
¢þ
>WENV182544222
OJBE01011415
[OJBE] seawater metagenome; Sea water
332
408
+
Pro
TGG
[ENA]
¢þ
>WENV182547771
OJBT01003056
[OJBT] seawater metagenome; Sea water
788
864
+
Pro
TGG
[ENA]
¢þ
>WENV182557736
OJDK01004790
[OJDK] seawater metagenome; Sea water
703
627
-
Pro
TGG
[ENA]
¢þ
>WENV182559887
OJDQ01015342
[OJDQ] seawater metagenome; Sea water
348
424
+
Pro
TGG
[ENA]
¢þ
>WENV182567202
OJEN01013277
[OJEN] seawater metagenome; Sea water
425
349
-
Pro
TGG
[ENA]
¢þ
>WENV182567557
OJEO01006937
[OJEO] seawater metagenome; Sea water
889
965
+
Pro
TGG
[ENA]
¢þ
>WENV182567617
OJEO01021585
[OJEO] seawater metagenome; Sea water
4
80
+
Pro
TGG
[ENA]
¢þ
>WENV182568909
OJEX01001254
[OJEX] seawater metagenome; Sea water
1255
1331
+
Pro
TGG
[ENA]
¢þ
>WENV182571248
OJFG01003052
[OJFG] seawater metagenome; Sea water
1205
1129
-
Pro
TGG
[ENA]
¢þ
>WENV182577358
OJGD01002109
[OJGD] seawater metagenome; Sea water
989
913
-
Pro
TGG
[ENA]
¢þ
>WENV182585463
OJHH01027656
[OJHH] seawater metagenome; Sea water
777
701
-
Pro
TGG
[ENA]
¢þ
>WENV182587440
OJHM01006872
[OJHM] seawater metagenome; Sea water
1032
956
-
Pro
TGG
[ENA]
¢þ
>W141290133
JASC01000014
Alphaproteobacteria
Sulfitobacter noctilucae NB-68 [JASC]
1311442
1311366
-
Pro
TGG
[ENA]
¡û
>W141290162
JASD01000008
Alphaproteobacteria
Sulfitobacter noctilucicola NB-77 [JASD]
2957433
2957509
+
Pro
TGG
[ENA]
¡û
>W141290214
JASE01000005
Alphaproteobacteria
Sulfitobacter geojensis MM-124 [JASE]
2531960
2531884
-
Pro
TGG
[ENA]
¡û
>W141290337
JASH01000014
Alphaproteobacteria
Sulfitobacter mediterraneus KCTC 32188 [JASH]
285945
286021
+
Pro
TGG
[ENA]
¡û
>WENV183057206
OLHK01015220
[OLHK] seawater metagenome; Sea water
506
582
+
Pro
TGG
[ENA]
¢þ
>WENV183750050
PPFU01251986
[PPFU] hypolithon metagenome; Antarctic Hypolithon
394
470
+
Pro
TGG
[ENA]
¢þ
>WENV170023880
BCQL01007506
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1491
1567
+
Pro
TGG
[ENA]
¢þ
>WENV170348456
CETG01269395
[CETG] marine metagenome genome assembly TARA_122_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
268
192
-
Pro
TGG
[ENA]
¢þ
>W141426676
JEMU01000001
Alphaproteobacteria
Sulfitobacter mediterraneus [JEMU]
183544
183468
-
Pro
TGG
[ENA]
¡û
>WENV170476477
CEVI01115584
[CEVI] marine metagenome genome assembly TARA_142_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
381
457
+
Pro
TGG
[ENA]
¢þ
>WENV170521284
CEWF01147727
[CEWF] marine metagenome genome assembly TARA_122_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
595
519
-
Pro
TGG
[ENA]
¢þ
>WENV170582500
FUFK010080962
[FUFK] metagenome; unknown
617
541
-
Pro
TGG
[ENA]
¢þ
>WENV170590926
FUFK010745166
[FUFK] metagenome; unknown
529
605
+
Pro
TGG
[ENA]
¢þ
>WENV170595954
FUFK012036477
[FUFK] metagenome; unknown
184
260
+
Pro
TGG
[ENA]
¢þ
>WENV170765411
LWDU01037403
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
30334
30410
+
Pro
TGG
[ENA]
¢þ
>WENV170964461
MRWG01013587
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1423
1347
-
Pro
TGG
[ENA]
¢þ
>C181123324
CP025803
Alphaproteobacteria
Sulfitobacter sp. SK011 [CP025803]
2621242
2621166
-
Pro
TGG
-
¡û
>C181152307
CP027407
Alphaproteobacteria
Roseobacter denitrificans FDAARGOS_309 [CP027407]
1085211
1085135
-
Pro
TGG
-
¡û
>C191018036
CP020694
Alphaproteobacteria
Sulfitobacter sp. D7 [CP020694]
1717103
1717179
+
Pro
TGG
-
¡û
>W1910285352
FRFA01000007
Alphaproteobacteria
Tateyamaria sp. Alg231-49 [FRFA]
136742
136818
+
Pro
TGG
[ENA]
¡û
>W1910549363
FZPF01000007
Alphaproteobacteria
Jannaschia aquimarina DSM 28248 [FZPF]
227483
227559
+
Pro
TGG
[ENA]
¡û
>W1910814133
MVIQ01000001
Alphaproteobacteria
Sulfitobacter indolifex SAORIC-263 [MVIQ]
447545
447469
-
Pro
TGG
[ENA]
¡û
>W1911539373
OMPT01000010
Alphaproteobacteria
Sulfitobacter mediterraneus EL44 [OMPT]
558853
558929
+
Pro
TGG
[ENA]
¡û
>W1911749285
QWGA01000007
Alphaproteobacteria
Henriciella algicola CCUG67844 [QWGA]
252313
252389
+
Pro
TGG
[ENA]
¡û
>W1810494722
QBFD01000025
Alphaproteobacteria
Sulfitobacter sp. DFL-14 [QBFD]
90134
90058
-
Pro
TGG
[ENA]
¡û
>W1810504301
QBKU01000002
Alphaproteobacteria
Sulfitobacter mediterraneus DSM 12244 [QBKU]
164482
164406
-
Pro
TGG
[ENA]
¡û
>C11118681
CP002623
Alphaproteobacteria
Roseobacter litoralis Och 149 [CP002623]
2476086
2476010
-
Pro
TGG
[Ensembl]
¡û
>W1511483006
JWLL01000006
Alphaproteobacteria
Tateyamaria sp. ANG-S1 [JWLL]
293007
293083
+
Pro
TGG
[ENA]
¡û
>W1511524559
JYFE01000043
Alphaproteobacteria
Jannaschia aquimarina GSW-M26 [JYFE]
4664
4740
+
Pro
TGG
[ENA]
¡û
>W1610983535
LWEP01000492
Alphaproteobacteria
Sulfitobacter sp. HI0021 HI0021 [LWEP]
15885
15961
+
Pro
TGG
[ENA]
¡û
>W1610983581
LWEQ01000473
Alphaproteobacteria
Sulfitobacter sp. HI0023 HI0023 [LWEQ]
3949
3873
-
Pro
TGG
[ENA]
¡û
>W1610983610
LWER01000149
Alphaproteobacteria
Sulfitobacter sp. HI0027 HI0027 [LWER]
12328
12252
-
Pro
TGG
[ENA]
¡û
>W1610983995
LWEX01000141
Alphaproteobacteria
Sulfitobacter sp. HI0040 HI0040 [LWEX]
4130
4206
+
Pro
TGG
[ENA]
¡û
>W1610984381
LWFD01000030
Alphaproteobacteria
Sulfitobacter sp. HI0054 [LWFD]
5215
5291
+
Pro
TGG
[ENA]
¡û
>W1610985185
LWFQ01000143
Alphaproteobacteria
Sulfitobacter sp. HI0076 HI0076 [LWFQ]
4879
4803
-
Pro
TGG
[ENA]
¡û
>W1610985469
LWFW01000114
Alphaproteobacteria
Sulfitobacter sp. HI0082 HI0082 [LWFW]
4873
4797
-
Pro
TGG
[ENA]
¡û
>W1610985526
LWFW01001985
Alphaproteobacteria
Sulfitobacter sp. HI0082 HI0082 [LWFW]
563
487
-
Pro
TGG
[ENA]
¡û
>W1610986142
LWGH01000259
Alphaproteobacteria
Sulfitobacter sp. HI0129 HI0129 [LWGH]
1502
1578
+
Pro
TGG
[ENA]
¡û
>W1611013180
LXYI01000005
Alphaproteobacteria
Sulfitobacter sp. EhC04 [LXYI]
19750
19674
-
Pro
TGG
[ENA]
¡û
>W1611013364
LXYM01000013
Alphaproteobacteria
Sulfitobacter geojensis [LXYM]
22740
22664
-
Pro
TGG
[ENA]
¡û
>W1710515183
FNBP01000004
Alphaproteobacteria
Sulfitobacter delicatus [FNBP]
51794
51870
+
Pro
TGG
[ENA]
¡û
>W1710559751
FOMW01000009
Alphaproteobacteria
Sulfitobacter brevis [FOMW]
171999
172075
+
Pro
TGG
[ENA]
¡û
>W1710562009
FOOO01000004
Alphaproteobacteria
Roseobacter denitrificans OCh 114 [FOOO]
128794
128718
-
Pro
TGG
[ENA]
¡û
>W1710562845
FOPG01000001
Alphaproteobacteria
Sulfitobacter dubius [FOPG]
457432
457508
+
Pro
TGG
[ENA]
¡û
>W1710583490
FQUV01000002
Alphaproteobacteria
Litoreibacter ascidiaceicola [FQUV]
504410
504486
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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