This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147326 (11 seq.)
>WENV180073863
MPMA02105487
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
2787
2862
+
Pro
TGG
[ENA]
¡û
>WENV180077362
MPMB02045077
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
3155
3230
+
Pro
TGG
[ENA]
¡û
>WENV180084053
MPMD02141326
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
762
837
+
Pro
TGG
[ENA]
¡û
>WENV180094092
MPMF02365938
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
873
798
-
Pro
TGG
[ENA]
¡û
>WENV180276895
OBHV01004745
[OBHV] metagenome; water
63
140
+
Pro
TGG
[ENA]
¡û
>WENV183704158
PDWI01000058
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
72160
72086
-
Pro
TGG
[ENA]
¡û
>WENV183711619
PDWI01074877
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2188
2262
+
Pro
TGG
[ENA]
¡û
>WENV183716596
PDWJ01000066
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
63576
63650
+
Pro
TGG
[ENA]
¡û
>WENV183716778
PDWJ01000182
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
75999
75925
-
Pro
TGG
[ENA]
¡û
>WENV170551886
CXWJ01028079
[CXWJ] wastewater metagenome; activated sludge
3436
3362
-
Pro
TGG
[ENA]
¡û
>WENV170896904
MDTD01102854
[MDTD] marine metagenome; seawater
1980
1905
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK