This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147509 (46 seq.)
>W1711326606
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
445783
445859
+
Arg
TCT
[ENA]
¡û
>C171085193
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
2383412
2383336
-
Arg
TCT
-
¡û
>W131050720
AMXA01000011
Betaproteobacteria
Thauera sp. 28 [AMXA]
83213
83137
-
Arg
TCT
[ENA]
¡û
>W131050763
AMXB01000006
Betaproteobacteria
Thauera sp. 27 [AMXB]
127479
127403
-
Arg
TCT
[ENA]
¡û
>W131050802
AMXC01000002
Betaproteobacteria
Thauera sp. 63 [AMXC]
234392
234316
-
Arg
TCT
[ENA]
¡û
>W131050880
AMXD01000076
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
11135
11211
+
Arg
TCT
[ENA]
¡û
>W131050917
AMXE01000007
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
8363
8287
-
Arg
TCT
[ENA]
¡û
>W131050978
AMXF01000067
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
2957
3033
+
Arg
TCT
[ENA]
¡û
>C001315
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
2308196
2308120
-
Arg
TCT
[Ensembl]
¡û
>WENV180000119
CZVZ01001240
[CZVZ] metagenome; unknown
2551
2627
+
Arg
TCT
[ENA]
¢þ
>WENV180285543
OBID01514976
[OBID] metagenome; sludge
71
147
+
Arg
TCT
[ENA]
¢þ
>W141078515
ATJV01000048
Betaproteobacteria
Thauera terpenica 58Eu [ATJV]
201086
201162
+
Arg
TCT
[ENA]
¡û
>W08008011
ABKT01000029
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
17014
16941
-
Arg
TCT
[ENA]
¡û
>WENV170000200
AERA01023750
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
197
121
-
Arg
TCT
[ENA]
¢þ
>WENV170560984
CZCA01001741
[CZCA] anaerobic digester metagenome; anaerobic digester
4165
4089
-
Arg
TCT
[ENA]
¢þ
>WENV170650164
JRYD01017488
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
824
900
+
Arg
TCT
[ENA]
¢þ
>WENV170650759
JRYE01016617
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
1519
1595
+
Arg
TCT
[ENA]
¢þ
>WENV170652578
JRYH01007115
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1225
1301
+
Arg
TCT
[ENA]
¢þ
>WENV170652692
JRYH01015665
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
3467
3391
-
Arg
TCT
[ENA]
¢þ
>WENV170653135
JRYI01006043
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
763
839
+
Arg
TCT
[ENA]
¢þ
>WENV170654715
JRYL01008245
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
2166
2090
-
Arg
TCT
[ENA]
¢þ
>WENV170654850
JRYL01039720
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
43
119
+
Arg
TCT
[ENA]
¢þ
>C181042984
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
1220906
1220982
+
Arg
TCT
-
¡û
>C181081488
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
1405940
1405864
-
Arg
TCT
-
¡û
>C181121192
CP025682
Betaproteobacteria
Pseudazoarcus pumilus SY39 [CP025682]
1582925
1583001
+
Arg
TCT
-
¡û
>C181164202
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
1440797
1440721
-
Arg
TCT
-
¡û
>C181165146
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
1126367
1126443
+
Arg
TCT
-
¡û
>C181176818
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
1861656
1861580
-
Arg
TCT
-
¡û
>C191022909
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
2923309
2923233
-
Arg
TCT
-
¡û
>W141561729
JHYR01000014
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
8627
8551
-
Arg
TCT
[ENA]
¡û
>W1911114380
NOIH01000018
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
16169
16093
-
Arg
TCT
[ENA]
¡û
>W1810444883
PZKC01000001
Betaproteobacteria
Pseudothauera lacus D20 [PZKC]
376006
375930
-
Arg
TCT
[ENA]
¡û
>W1810679164
QKOE01000007
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
117610
117686
+
Arg
TCT
[ENA]
¡û
>C10113218
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
2131145
2131069
-
Arg
TCT
[Ensembl]
¡û
>WENV11100558
AERA01023750
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
197
121
-
Arg
TCT
[ENA]
¡û
>W1511398281
JTDM01000013
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
207069
207145
+
Arg
TCT
[ENA]
¡û
>W1511686473
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
2201394
2201318
-
Arg
TCT
[ENA]
¡û
>W11185893
CACR01001381
Betaproteobacteria
Thauera selenatis AX [CACR]
7572
7648
+
Arg
TCT
[ENA]
¡û
>C161075129
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
574521
574445
-
Arg
TCT
[Ensembl]
¡û
>C161095103
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
2381433
2381357
-
Arg
TCT
-
¡û
>W1610042925
BAZL01000591
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
920
996
+
Arg
TCT
[ENA]
¡û
>W1610071710
BCUG01000038
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
22398
22322
-
Arg
TCT
[ENA]
¡û
>W1611063342
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
445783
445859
+
Arg
TCT
[ENA]
¡û
>W1710040085
BAZL01000591
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
920
996
+
Arg
TCT
[ENA]
¡û
>W1710068912
BCUG01000038
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
22398
22322
-
Arg
TCT
[ENA]
¡û
>W1710539439
FNVJ01000001
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
286280
286356
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK