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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147609 (55 seq.)
>W1711043857
LRMP01000001
Actinomycetota
Brachybacterium sp. sponge [LRMP]
1444504
1444428
-
Asp
GTC
[ENA]
¡û
>W1711185756
LWNQ01000019
Actinomycetota
Dermabacter sp. HMSC08H10 [LWNQ]
66946
67022
+
Asp
GTC
[ENA]
¡û
>W1711186230
LWOB01000063
Actinomycetota
Brachybacterium sp. HMSC06H03 [LWOB]
15532
15456
-
Asp
GTC
[ENA]
¡û
>W1711186336
LWOD01000030
Actinomycetota
Dermabacter sp. HMSC06F07 [LWOD]
82009
82085
+
Asp
GTC
[ENA]
¡û
>W131098096
AORC01000002
Actinomycetota
Brachybacterium muris UCD-AY4 [AORC]
77477
77401
-
Asp
GTC
[ENA]
¡û
>W131206261
ATFO01000002
Actinomycetota
Dermabacter sp. HFH0086 [ATFO]
103110
103186
+
Asp
GTC
[ENA]
¡û
>WENV180183878
OAWQ01008235
[OAWQ] human gut metagenome; faeces
256
330
+
Asp
GTC
[ENA]
¢þ
>WENV180312660
OBJZ01000036
[OBJZ] human gut metagenome; fecal sample
7315
7389
+
Asp
GTC
[ENA]
¢þ
>WENV180554424
OCJN01000823
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
259
185
-
Asp
GTC
[ENA]
¢þ
>WENV182812858
OJXV01000173
[OJXV] human gut metagenome; human gut
11994
12068
+
Asp
GTC
[ENA]
¢þ
>WENV182825551
OKCK01000425
[OKCK] human gut metagenome; human gut
2237
2163
-
Asp
GTC
[ENA]
¢þ
>WENV182831629
OKEG01000037
[OKEG] human gut metagenome; human gut
68825
68899
+
Asp
GTC
[ENA]
¢þ
>WENV182855213
OKMY01000409
[OKMY] human gut metagenome; human gut
2352
2278
-
Asp
GTC
[ENA]
¢þ
>WENV182962593
OKWN01008318
[OKWN] human gut metagenome; stool
69
143
+
Asp
GTC
[ENA]
¢þ
>WENV183088009
OLJQ01003519
[OLJQ] human gut metagenome; human gut
424
498
+
Asp
GTC
[ENA]
¢þ
>W141400419
JDRS01000002
Actinomycetota
Dermabacter hominis 1368 [JDRS]
280637
280713
+
Asp
GTC
[ENA]
¡û
>W141406670
JDYK01000009
Actinomycetota
Brachybacterium phenoliresistens [JDYK]
36397
36475
+
Asp
GTC
[ENA]
¡û
>C181062007
CP022316
Actinomycetota
Brachybacterium avium VR2415 [CP022316]
1106127
1106202
+
Asp
GTC
-
¡û
>C181084700
CP023564
Actinomycetota
Brachybacterium ginsengisoli DCY80 [CP023564]
903650
903575
-
Asp
GTC
-
¡û
>C181199706
CP031356
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [CP031356]
2212316
2212391
+
Asp
GTC
-
¡û
>W09108380
ABTF01000002
Actinomycetota
Brachybacterium faecium DSM 4810 [ABTF]
315807
315883
+
Asp
GTC
[ENA]
¡û
>W1910321396
FSEE01000030
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 417 [FSEE]
11295
11221
-
Asp
GTC
[ENA]
¡û
>W1910442429
FWFG01000001
Actinomycetota
Brachybacterium nesterenkovii CIP104813 [FWFG]
9157
9080
-
Asp
GTC
[ENA]
¡û
>W1910442551
FWFH01000176
Actinomycetota
Brachybacterium faecium FM_RA_Lac3 [FWFH]
924
999
+
Asp
GTC
[ENA]
¡û
>W1910498735
FXXB01000008
Actinomycetota
Brachybacterium massiliense mt5 [FXXB]
747227
747302
+
Asp
GTC
[ENA]
¡û
>W1911203259
NRGR01000004
Actinomycetota
Brachybacterium alimentarium 341_9 [NRGR]
9764
9839
+
Asp
GTC
[ENA]
¡û
>W1911203334
NRGS01000014
Actinomycetota
Brachybacterium alimentarium 908_11 [NRGS]
9748
9823
+
Asp
GTC
[ENA]
¡û
>W1911532906
OIWY01000006
Actinomycetota
Brachybacterium timonense Marseille-P4339 [OIWY]
1348423
1348497
+
Asp
GTC
[ENA]
¡û
>W1911596790
PNHL01000001
Actinomycetota
Brachybacterium sp. UMB0905 [PNHL]
23472
23549
+
Asp
GTC
[ENA]
¡û
>W1911702233
QOCI01000008
Actinomycetota
Brachybacterium paraconglomeratum KCTC 9916 [QOCI]
124791
124716
-
Asp
GTC
[ENA]
¡û
>W1911726636
QSWH01000002
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [QSWH]
37307
37382
+
Asp
GTC
[ENA]
¡û
>W1911765370
QXCP01000009
Actinomycetota
Brachybacterium sp. EE-P12 [QXCP]
380637
380712
+
Asp
GTC
[ENA]
¡û
>W1810187327
PKHM01000006
Actinomycetota
Dermabacter hominis UMB0490 [PKHM]
20100
20026
-
Asp
GTC
[ENA]
¡û
>W1810196869
PNFB01000002
Actinomycetota
Brachybacterium sp. YJGR34 [PNFB]
191943
191867
-
Asp
GTC
[ENA]
¡û
>W1810587387
QFKX01000002
Actinomycetota
Brachybacterium endophyticum M1HQ-2 [QFKX]
484814
484737
-
Asp
GTC
[ENA]
¡û
>W1810756698
QPGF01000031
Actinomycetota
Brachybacterium alimentarium 738_10 [QPGF]
9378
9453
+
Asp
GTC
[ENA]
¡û
>W1810756742
QPGG01000028
Actinomycetota
Brachybacterium alimentarium 862_8 [QPGG]
12513
12588
+
Asp
GTC
[ENA]
¡û
>W1810756773
QPGH01000016
Actinomycetota
Brachybacterium alimentarium 876_9 [QPGH]
92803
92728
-
Asp
GTC
[ENA]
¡û
>W1810756853
QPGI01000028
Actinomycetota
Brachybacterium alimentarium 900_8 [QPGI]
192345
192270
-
Asp
GTC
[ENA]
¡û
>W1810756876
QPGJ01000011
Actinomycetota
Brachybacterium alimentarium 947_11 [QPGJ]
143624
143549
-
Asp
GTC
[ENA]
¡û
>W1810756933
QPGK01000016
Actinomycetota
Brachybacterium alimentarium 962_10 [QPGK]
136313
136238
-
Asp
GTC
[ENA]
¡û
>W1810757133
QPGN01000008
Actinomycetota
Brachybacterium sp. JB7 [QPGN]
125247
125322
+
Asp
GTC
[ENA]
¡û
>W1510021909
BCAK01000011
Actinomycetota
Brachybacterium sp. SW0106-09 [BCAK]
15632
15556
-
Asp
GTC
[ENA]
¡û
>C10101557
CP001643
Actinomycetota
Brachybacterium faecium DSM 4810 [CP001643]
2800886
2800962
+
Asp
GTC
[Ensembl]
¡û
>W11177836
AGBX01000001
Actinomycetota
Brachybacterium squillarum M-6-3 [AGBX]
150400
150324
-
Asp
GTC
[ENA]
¡û
>C161039614
CP012117
Actinomycetota
Dermabacter vaginalis AD1-86 [CP012117]
2009384
2009460
+
Asp
GTC
[Ensembl]
¡û
>C161106435
LN849456
Actinomycetota
Devriesea agamarum IMP2 [LN849456]
1199532
1199606
+
Asp
GTC
-
¡û
>W1610051597
BBHA01000132
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
2010
2086
+
Asp
GTC
[ENA]
¡û
>W1610069250
BCSI01000002
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
268100
268024
-
Asp
GTC
[ENA]
¡û
>W1610095064
CYUG01000017
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
72009
72085
+
Asp
GTC
[ENA]
¡û
>W121018106
AGSO01000004
Actinomycetota
Brachybacterium paraconglomeratum LC44 [AGSO]
422478
422554
+
Asp
GTC
[ENA]
¡û
>W1610885156
LRMP01000001
Actinomycetota
Brachybacterium sp. sponge [LRMP]
1444504
1444428
-
Asp
GTC
[ENA]
¡û
>W1710047975
BBHA01000132
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
2010
2086
+
Asp
GTC
[ENA]
¡û
>W1710066623
BCSI01000002
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
268100
268024
-
Asp
GTC
[ENA]
¡û
>W1710097859
CYUG01000017
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
72009
72085
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK