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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147610 (38 seq.)
>W1711185734
LWNQ01000015
Actinomycetota
Dermabacter sp. HMSC08H10 [LWNQ]
106639
106715
+
Lys
CTT
[ENA]
¡û
>W1711185762
LWNQ01000022
Actinomycetota
Dermabacter sp. HMSC08H10 [LWNQ]
2015
2089
+
Lys
CTT
[ENA]
¡û
>W1711186351
LWOD01000031
Actinomycetota
Dermabacter sp. HMSC06F07 [LWOD]
532970
532894
-
Lys
CTT
[ENA]
¡û
>C171070718
CP017965
Actinomycetota
Nocardiopsis dassonvillei NOCA502F [CP017965]
1348930
1349004
+
Lys
CTT
-
¡û
>W131206280
ATFO01000007
Actinomycetota
Dermabacter sp. HFH0086 [ATFO]
351021
350947
-
Lys
CTT
[ENA]
¡û
>W131206295
ATFO01000008
Actinomycetota
Dermabacter sp. HFH0086 [ATFO]
589293
589217
-
Lys
CTT
[ENA]
¡û
>WENV180183891
OAWQ01010672
[OAWQ] human gut metagenome; faeces
121
195
+
Lys
CTT
[ENA]
¢þ
>WENV180312679
OBJZ01000046
[OBJZ] human gut metagenome; fecal sample
8087
8161
+
Lys
CTT
[ENA]
¢þ
>WENV180312715
OBJZ01000057
[OBJZ] human gut metagenome; fecal sample
121913
121987
+
Lys
CTT
[ENA]
¢þ
>WENV180421609
OBVQ01012044
[OBVQ] human gut metagenome; faeces
156
82
-
Lys
CTT
[ENA]
¢þ
>WENV180554501
OCJN01003853
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
225
151
-
Lys
CTT
[ENA]
¢þ
>WENV182820653
OKAO01000518
[OKAO] human gut metagenome; human gut
1964
2038
+
Lys
CTT
[ENA]
¢þ
>WENV182825490
OKCK01000088
[OKCK] human gut metagenome; human gut
24723
24797
+
Lys
CTT
[ENA]
¢þ
>WENV182825536
OKCK01000290
[OKCK] human gut metagenome; human gut
7672
7598
-
Lys
CTT
[ENA]
¢þ
>WENV182831689
OKEG01000150
[OKEG] human gut metagenome; human gut
28211
28137
-
Lys
CTT
[ENA]
¢þ
>WENV182845665
OKJE01000507
[OKJE] human gut metagenome; human gut
1479
1405
-
Lys
CTT
[ENA]
¢þ
>WENV182849751
OKKT01003642
[OKKT] human gut metagenome; human gut
138
64
-
Lys
CTT
[ENA]
¢þ
>WENV182855167
OKMY01000201
[OKMY] human gut metagenome; human gut
12476
12402
-
Lys
CTT
[ENA]
¢þ
>WENV182855221
OKMY01000440
[OKMY] human gut metagenome; human gut
1775
1849
+
Lys
CTT
[ENA]
¢þ
>WENV182858653
OKOF01002216
[OKOF] human gut metagenome; human gut
195
121
-
Lys
CTT
[ENA]
¢þ
>WENV182962519
OKWN01002106
[OKWN] human gut metagenome; stool
815
889
+
Lys
CTT
[ENA]
¢þ
>WENV183087982
OLJQ01001745
[OLJQ] human gut metagenome; human gut
342
416
+
Lys
CTT
[ENA]
¢þ
>W141400416
JDRS01000001
Actinomycetota
Dermabacter hominis 1368 [JDRS]
142251
142177
-
Lys
CTT
[ENA]
¡û
>W141400440
JDRS01000006
Actinomycetota
Dermabacter hominis 1368 [JDRS]
51793
51717
-
Lys
CTT
[ENA]
¡û
>C181062003
CP022316
Actinomycetota
Brachybacterium avium VR2415 [CP022316]
513904
513980
+
Lys
CTT
-
¡û
>C181084645
CP023563
Actinomycetota
Brachybacterium vulturis VM2412 [CP023563]
2001209
2001133
-
Lys
CTT
-
¡û
>W1910321379
FSEE01000020
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 417 [FSEE]
26541
26467
-
Lys
CTT
[ENA]
¡û
>W1910321410
FSEE01000051
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 417 [FSEE]
179
105
-
Lys
CTT
[ENA]
¡û
>W1911532917
OIWY01000006
Actinomycetota
Brachybacterium timonense Marseille-P4339 [OIWY]
769560
769485
-
Lys
CTT
[ENA]
¡û
>W1810187289
PKHM01000001
Actinomycetota
Dermabacter hominis UMB0490 [PKHM]
121695
121769
+
Lys
CTT
[ENA]
¡û
>W1810187314
PKHM01000002
Actinomycetota
Dermabacter hominis UMB0490 [PKHM]
246690
246616
-
Lys
CTT
[ENA]
¡û
>W1810535059
QDDJ01000018
Actinomycetota
Ornithinimicrobium cavernae KCTC 49018 [QDDJ]
102495
102419
-
Lys
CTT
[ENA]
¡û
>C161039627
CP012117
Actinomycetota
Dermabacter vaginalis AD1-86 [CP012117]
1623669
1623593
-
Lys
CTT
[Ensembl]
¡û
>C161039638
CP012117
Actinomycetota
Dermabacter vaginalis AD1-86 [CP012117]
461281
461205
-
Lys
CTT
[Ensembl]
¡û
>W1610069254
BCSI01000003
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
25569
25645
+
Lys
CTT
[ENA]
¡û
>W1610095044
CYUG01000011
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
577841
577765
-
Lys
CTT
[ENA]
¡û
>W1710066627
BCSI01000003
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
25569
25645
+
Lys
CTT
[ENA]
¡û
>W1710097839
CYUG01000011
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
577841
577765
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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