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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147623 (29 seq.)
>W1710881430
LMTB01000046
Actinomycetota
Dietzia timorensis [LMTB]
20135
20059
-
Ile
GAT
[ENA]
¡û
>W1711081656
LSSV01000104
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
139420
139494
+
Ile
GAT
[ENA]
¡û
>W1711082295
LSTT01000157
Actinomycetota
Dietzia cinnamea [LSTT]
42550
42476
-
Ile
GAT
[ENA]
¡û
>W1711139745
LVFF01000040
Actinomycetota
Dietzia maris [LVFF]
42374
42300
-
Ile
GAT
[ENA]
¡û
>W1711187594
LWPP01000365
Actinomycetota
Dietzia sp. HMSC21D01 [LWPP]
603
677
+
Ile
GAT
[ENA]
¡û
>W1711351227
MDCG01000177
Actinomycetota
Dietzia alimentaria [MDCG]
2118
2044
-
Ile
GAT
[ENA]
¡û
>C171044531
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
14769
14845
+
Ile
GAT
-
¡û
>W131099079
AOSR01000002
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
28204
28128
-
Ile
GAT
[ENA]
¡û
>WENV181170056
OEIV010021705
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
177
252
+
Ile
GAT
[ENA]
¢þ
>WENV170973336
MTKY01028878
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
100
176
+
Ile
GAT
[ENA]
¢þ
>C181017326
CP015449
Actinomycetota
Dietzia lutea YIM 80766 [CP015449]
23436
23510
+
Ile
GAT
-
¡û
>C181017376
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
12454
12529
+
Ile
GAT
-
¡û
>C181107030
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
12312
12387
+
Ile
GAT
-
¡û
>C181148302
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
1369235
1369309
+
Ile
GAT
-
¡û
>W1911279006
NTGA01000012
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
173952
173877
-
Ile
GAT
[ENA]
¡û
>W1911422534
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
2403767
2403841
+
Ile
GAT
[ENA]
¡û
>W1810463928
PZZY01000002
Actinomycetota
Dietzia psychralcaliphila DSM 44820 [PZZY]
626057
626132
+
Ile
GAT
[ENA]
¡û
>W1810580844
QETM01000001
Actinomycetota
Dietzia maris AMT [QETM]
107207
107281
+
Ile
GAT
[ENA]
¡û
>W1810722019
QNTT01000038
Actinomycetota
Dietzia maris SST1 [QNTT]
5672
5598
-
Ile
GAT
[ENA]
¡û
>W11139526
AEKG01000305
Actinomycetota
Dietzia cinnamea P4 [AEKG]
5598
5524
-
Ile
GAT
[ENA]
¡û
>W11178746
AGFF01000003
Actinomycetota
Dietzia alimentaria 72 [AGFF]
112111
112185
+
Ile
GAT
[ENA]
¡û
>W1610069377
BCSL01000001
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
5022
4948
-
Ile
GAT
[ENA]
¡û
>W1610069896
BCSW01000008
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
40549
40623
+
Ile
GAT
[ENA]
¡û
>W1610743776
LMTB01000046
Actinomycetota
Dietzia timorensis [LMTB]
20135
20059
-
Ile
GAT
[ENA]
¡û
>W1610920491
LSSV01000104
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
139420
139494
+
Ile
GAT
[ENA]
¡û
>W1610921080
LSTT01000157
Actinomycetota
Dietzia cinnamea [LSTT]
42550
42476
-
Ile
GAT
[ENA]
¡û
>W1610950753
LVFF01000040
Actinomycetota
Dietzia maris [LVFF]
42374
42300
-
Ile
GAT
[ENA]
¡û
>W1710066750
BCSL01000001
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
5022
4948
-
Ile
GAT
[ENA]
¡û
>W1710067269
BCSW01000008
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
40549
40623
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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