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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147646 (125 seq.)
>W1711027081
LRDC01000015
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
2764
2688
-
Pro
GGG
[ENA]
¡û
>W1711174334
LWED01000038
Gammaproteobacteria
Shewanella baltica [LWED]
35982
35906
-
Pro
GGG
[ENA]
¡û
>W1711326702
MBFW01000053
Gammaproteobacteria
Shewanella algae [MBFW]
34600
34524
-
Pro
GGG
[ENA]
¡û
>W1711340576
MCBT01000037
Gammaproteobacteria
Shewanella colwelliana [MCBT]
68121
68197
+
Pro
GGG
[ENA]
¡û
>W1711360877
MDKA01000024
Gammaproteobacteria
Shewanella algae [MDKA]
65492
65416
-
Pro
GGG
[ENA]
¡û
>W1711621594
MPDG02000001
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
1696148
1696072
-
Pro
GGG
[ENA]
¡û
>W1711934416
NAJR01000004
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
333727
333651
-
Pro
GGG
[ENA]
¡û
>W1712080485
NGZL01000103
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
4911
4987
+
Pro
GGG
[ENA]
¡û
>WENV012797
AACY020349412
Marine microbial communities from Global Ocean Sampling (GOS)
3674
3596
-
Pro
GGG
[ENA]
>WENV013195
AACY020362545
Marine microbial communities from Global Ocean Sampling (GOS)
1698
1620
-
Pro
GGG
[ENA]
>WENV013596
AACY020374142
Marine microbial communities from Global Ocean Sampling (GOS)
26844
26766
-
Pro
GGG
[ENA]
>C019858
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
1894829
1894753
-
Pro
GGG
[Ensembl]
¡û
>C020705
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
2970037
2969961
-
Pro
GGG
[Ensembl]
¡û
>C021981
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
2981097
2981173
+
Pro
GGG
[Ensembl]
¡û
>C022278
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
2919123
2919047
-
Pro
GGG
[Ensembl]
¡û
>C022379
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
2681970
2681894
-
Pro
GGG
[Ensembl]
¡û
>C022478
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
2749122
2749046
-
Pro
GGG
[Ensembl]
¡û
>C022546
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1974623
1974699
+
Pro
GGG
[Ensembl]
¡û
>C022729
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
1695223
1695147
-
Pro
GGG
[Ensembl]
¡û
>C022937
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
2124193
2124269
+
Pro
GGG
[Ensembl]
¡û
>C023310
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
2642223
2642147
-
Pro
GGG
[Ensembl]
¡û
>w026310
ABAU01000048
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
5743
5821
+
Pro
GGG
[ENA]
¡û
>w024887
AAZC01000018
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
69492
69414
-
Pro
GGG
[ENA]
¡û
>w018644
AATK01000042
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
18020
18098
+
Pro
GGG
[ENA]
¡û
>WENV181201191
OERM01009539
[OERM] metagenome; water of meat washing
206
130
-
Pro
GGG
[ENA]
¢þ
>W141171189
AXZL01000043
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
72016
72092
+
Pro
GGG
[ENA]
¡û
>C08008690
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3070357
3070284
-
Pro
GGG
[Ensembl]
¡û
>W141227799
BALL01000048
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
17662
17738
+
Pro
GGG
[ENA]
¡û
>W141227885
BALN01000004
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
69327
69403
+
Pro
GGG
[ENA]
¡û
>W141227974
BALO01000034
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
30117
30041
-
Pro
GGG
[ENA]
¡û
>C08008794
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
3146074
3146001
-
Pro
GGG
[Ensembl]
¡û
>W141276222
JADP01000028
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
53423
53347
-
Pro
GGG
[ENA]
¡û
>W141276836
JAEC01000025
Gammaproteobacteria
Shewanella colwelliana ATCC 39565 [JAEC]
28368
28292
-
Pro
GGG
[ENA]
¡û
>W141277046
JAEH01000009
Gammaproteobacteria
Shewanella waksmanii ATCC BAA-643 [JAEH]
55655
55731
+
Pro
GGG
[ENA]
¡û
>W141277688
JAEU01000003
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
33468
33544
+
Pro
GGG
[ENA]
¡û
>WENV170022217
BCQK01002100
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
3174
3250
+
Pro
GGG
[ENA]
¢þ
>WENV170022786
BCQK01048434
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
687
611
-
Pro
GGG
[ENA]
¢þ
>WENV170023438
BCQK01255795
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
149
73
-
Pro
GGG
[ENA]
¢þ
>WENV021192
AACY020563733
Marine microbial communities from Global Ocean Sampling (GOS)
85015
84937
-
Pro
GGG
[ENA]
>C181016878
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
3465136
3465060
-
Pro
GGG
-
¡û
>C181057598
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
1361368
1361292
-
Pro
GGG
-
¡û
>C181061317
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
2727890
2727966
+
Pro
GGG
-
¡û
>C181062953
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
1989798
1989874
+
Pro
GGG
-
¡û
>C181075039
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3986991
3987067
+
Pro
GGG
-
¡û
>C181164515
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
3902628
3902704
+
Pro
GGG
-
¡û
>C191015525
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
4404963
4404887
-
Pro
GGG
-
¡û
>C191017660
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
1376889
1376813
-
Pro
GGG
-
¡û
>W141520057
JGVI01000043
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
519
443
-
Pro
GGG
[ENA]
¡û
>C191107868
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
3159987
3159911
-
Pro
GGG
-
¡û
>C191117261
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
1989921
1989845
-
Pro
GGG
-
¡û
>C191148778
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
413885
413809
-
Pro
GGG
-
¡û
>C191155900
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
3942272
3942196
-
Pro
GGG
-
¡û
>C191155995
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
3290496
3290572
+
Pro
GGG
-
¡û
>C191156027
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
3810901
3810825
-
Pro
GGG
-
¡û
>C191173171
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
411992
412068
+
Pro
GGG
-
¡û
>C191185897
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
1662742
1662666
-
Pro
GGG
-
¡û
>C191187067
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
2743937
2744013
+
Pro
GGG
-
¡û
>C191187203
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
2698241
2698317
+
Pro
GGG
-
¡û
>C191205297
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
42067
41991
-
Pro
GGG
-
¡û
>C191206441
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
2078701
2078777
+
Pro
GGG
-
¡û
>W09102813
AAIN01000025
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
22838
22762
-
Pro
GGG
[ENA]
¡û
>W09102902
AAIO01000067
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
17852
17928
+
Pro
GGG
[ENA]
¡û
>W09103106
AAIV01000011
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
120106
120030
-
Pro
GGG
[ENA]
¡û
>W09104046
AALH01000023
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
55067
54991
-
Pro
GGG
[ENA]
¡û
>W09104335
AALN01000112
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
141
65
-
Pro
GGG
[ENA]
¡û
>W09104502
AALS01000047
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
26400
26324
-
Pro
GGG
[ENA]
¡û
>W09104632
AALX01000072
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
434
358
-
Pro
GGG
[ENA]
¡û
>W141801955
JPEO01000002
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
259137
259213
+
Pro
GGG
[ENA]
¡û
>W1910617454
LIRM01000038
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
17522
17598
+
Pro
GGG
[ENA]
¡û
>W1910645046
LVCY01000038
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
17834
17910
+
Pro
GGG
[ENA]
¡û
>W1910645082
LVDH01000001
Gammaproteobacteria
Shewanella algae AC [LVDH]
1145601
1145525
-
Pro
GGG
[ENA]
¡û
>W1910645213
LVDK01000021
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
27118
27042
-
Pro
GGG
[ENA]
¡û
>W1910645268
LVDU01000004
Gammaproteobacteria
Shewanella algae YHL [LVDU]
17600
17676
+
Pro
GGG
[ENA]
¡û
>C09109176
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
2131132
2131208
+
Pro
GGG
[Ensembl]
¡û
>W1910905588
NGVS01000025
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
96495
96419
-
Pro
GGG
[ENA]
¡û
>W1910913743
NHRI01000002
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
292330
292406
+
Pro
GGG
[ENA]
¡û
>W1910927025
NIJK01000007
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
32949
33025
+
Pro
GGG
[ENA]
¡û
>W1910927178
NIJL01000029
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
76276
76200
-
Pro
GGG
[ENA]
¡û
>W1910927265
NIJM01000050
Gammaproteobacteria
Shewanella chilikensis JC5 [NIJM]
6125
6049
-
Pro
GGG
[ENA]
¡û
>W1911551612
OXJV01000001
Gammaproteobacteria
Shewanella algidipiscicola [OXJV]
826443
826519
+
Pro
GGG
[ENA]
¡û
>W1911581932
PGVH01000040
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
117480
117404
-
Pro
GGG
[ENA]
¡û
>W1911710079
QPQT01000016
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
22308
22232
-
Pro
GGG
[ENA]
¡û
>W1911809512
QYYH01000182
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
7054
7130
+
Pro
GGG
[ENA]
¡û
>W1911809514
QYYH01000268
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
1166
1090
-
Pro
GGG
[ENA]
¡û
>W1911812353
QZEI01000063
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
14301
14377
+
Pro
GGG
[ENA]
¡û
>W1810073403
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
4006115
4006039
-
Pro
GGG
[ENA]
¡û
>W1810155297
PJAP01000417
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
383
307
-
Pro
GGG
[ENA]
¡û
>W1810157806
PJCD01000041
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
237765
237689
-
Pro
GGG
[ENA]
¡û
>W1810423018
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
1783694
1783618
-
Pro
GGG
[ENA]
¡û
>W1810585891
QFDC01000037
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
27832
27756
-
Pro
GGG
[ENA]
¡û
>W1810587735
QFLG01000016
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
58241
58317
+
Pro
GGG
[ENA]
¡û
>W1810671671
QJSY01000013
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
13607
13531
-
Pro
GGG
[ENA]
¡û
>W1810721589
QNSC01000013
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
3121
3045
-
Pro
GGG
[ENA]
¡û
>W1810786647
QRCS01000027
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
7877
7953
+
Pro
GGG
[ENA]
¡û
>W1510077716
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
537800
537724
-
Pro
GGG
[ENA]
¡û
>W10119083
ADVH01000035
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
12367
12291
-
Pro
GGG
[ENA]
¡û
>W10126021
AECY01000001
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
735760
735684
-
Pro
GGG
[ENA]
¡û
>W10126391
AEDE01000002
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
501317
501241
-
Pro
GGG
[ENA]
¡û
>W1511302184
JPII01000053
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
20711
20787
+
Pro
GGG
[ENA]
¡û
>W1511306541
JPMA01000020
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
53536
53460
-
Pro
GGG
[ENA]
¡û
>C11119409
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
2134803
2134879
+
Pro
GGG
[Ensembl]
¡û
>W1511366806
JSFF01000019
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
57168
57244
+
Pro
GGG
[ENA]
¡û
>C11119549
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3067672
3067596
-
Pro
GGG
[Ensembl]
¡û
>C11119648
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
3095541
3095465
-
Pro
GGG
[Ensembl]
¡û
>W1511403545
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
4369153
4369229
+
Pro
GGG
[ENA]
¡û
>C11121579
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
2646451
2646375
-
Pro
GGG
[Ensembl]
¡û
>W11125255
ADVH01000035
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
12367
12291
-
Pro
GGG
[ENA]
¡û
>W1511477928
JWGX01000016
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
123340
123416
+
Pro
GGG
[ENA]
¡û
>W11133282
AECY01000001
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
735760
735684
-
Pro
GGG
[ENA]
¡û
>W11133652
AEDE01000002
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
501317
501241
-
Pro
GGG
[ENA]
¡û
>W11169908
AFOZ01000028
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
4408
4332
-
Pro
GGG
[ENA]
¡û
>W11178460
AGEX01000006
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
113041
113117
+
Pro
GGG
[ENA]
¡û
>W121103298
AKZL01000003
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
41329
41253
-
Pro
GGG
[ENA]
¡û
>W1610042115
BAXN01000033
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
17913
17989
+
Pro
GGG
[ENA]
¡û
>W1610072116
BCUO01000032
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
66719
66795
+
Pro
GGG
[ENA]
¡û
>W1610077872
BCZT01000039
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
28939
28863
-
Pro
GGG
[ENA]
¡û
>W1610617831
LGYY01000060
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
21291
21367
+
Pro
GGG
[ENA]
¡û
>W1610875193
LRDC01000015
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
2764
2688
-
Pro
GGG
[ENA]
¡û
>W1610982647
LWED01000038
Gammaproteobacteria
Shewanella baltica [LWED]
35982
35906
-
Pro
GGG
[ENA]
¡û
>W1710039209
BAXN01000033
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
17913
17989
+
Pro
GGG
[ENA]
¡û
>W1710069318
BCUO01000032
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
66719
66795
+
Pro
GGG
[ENA]
¡û
>W1710075430
BCZT01000039
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
28939
28863
-
Pro
GGG
[ENA]
¡û
>W1710692505
JZWJ01000146
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
1559
1483
-
Pro
GGG
[ENA]
¡û
>W1710706627
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
3879627
3879703
+
Pro
GGG
[ENA]
¡û
>W1710744006
LGYY01000060
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
21291
21367
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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