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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147692 (10 seq.)
>W1911696627
QMEM01000001
Bacteroidota
Lewinella sp. IMCC34183 [QMEM]
890499
890575
+
Val
GAC
[ENA]
¡û
>W1911698455
QNQZ01000001
Bacteroidota
Lewinella sp. IMCC34191 [QNQZ]
132059
131983
-
Val
GAC
[ENA]
¡û
>W1810059787
PDLO01000001
Bacteroidota
Neolewinella marina MKG-38 [PDLO]
683479
683555
+
Val
GAC
[ENA]
¡û
>W1810296205
PTJC01000006
Bacteroidota
Neolewinella xylanilytica DSM 29526 [PTJC]
1185148
1185072
-
Val
GAC
[ENA]
¡û
>W2010567573
JAATJF010000001
Bacteroidota
Lewinella marina DSM 104084 [JAATJF]
733750
733674
-
Val
GAC
[ENA]
¡û
>W2010567660
JAATJH010000002
Bacteroidota
Lewinella antarctica DSM 105096 [JAATJH]
964765
964689
-
Val
GAC
[ENA]
¡û
>W2010726719
JACIFF010000002
Bacteroidota
Lewinella aquimaris DSM 105137 [JACIFF]
91176
91252
+
Val
GAC
[ENA]
¡û
>W2011276292
QMEM01000001
Bacteroidota
Lewinella sp. IMCC34183 [QMEM]
890499
890575
+
Val
GAC
[ENA]
¡û
>W2011277238
QNQZ01000001
Bacteroidota
Lewinella sp. IMCC34191 [QNQZ]
132059
131983
-
Val
GAC
[ENA]
¡û
>W2011680878
SRSF01000001
Bacteroidota
Lewinella sp. HSMS-39 [SRSF]
1189736
1189812
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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