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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147734 (7 seq.)
>W143006272
JACB01000039
Bacteroidota
Aquimarina megaterium XH134 [JACB]
43839
43916
+
Cys
GCA
[ENA]
¡û
>W1930035066
OMKB01000010
Bacteroidota
Aquimarina sp. Aq349 [OMKB]
405272
405197
-
Cys
GCA
[ENA]
¡û
>W2030029628
OMKB01000010
Bacteroidota
Aquimarina sp. Aq349 [OMKB]
405272
405197
-
Cys
GCA
[ENA]
¡û
>W2030047427
UYXD01000003
Bacteroidota
Aquimarina sp. Aq349 [UYXD]
134481
134406
-
Cys
GCA
[ENA]
¡û
>W2130022706
JADOUG010000014
Bacteroidota
Aquimarina sp. EL_32 [JADOUG]
45105
45180
+
Cys
GCA
[ENA]
¡û
>W2130022709
JADOUH010000015
Bacteroidota
Aquimarina sp. EL_35 [JADOUH]
74538
74463
-
Cys
GCA
[ENA]
¡û
>W2130022719
JADOUM010000015
Bacteroidota
Aquimarina sp. EL_43 [JADOUM]
75337
75262
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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