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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147760 (5 seq.)
>WENV180353966
OBLQ011238189
[OBLQ] soil metagenome; soil
169
243
+
Arg
TCG
[ENA]
¡û
>W1910285415
FRFC01000001
Nitrososphaerota
Candidatus Nitrosotalea sinensis Nd2 [FRFC]
109481
109555
+
Arg
TCG
[ENA]
¡û
>W1910402080
FUYK01000007
Nitrososphaerota
Candidatus Nitrosotalea bavarica SbT1 [FUYK]
544
469
-
Arg
TCG
[ENA]
¡û
>W2010395678
FRFC01000001
Nitrososphaerota
Candidatus Nitrosotalea sinensis Nd2 [FRFC]
109481
109555
+
Arg
TCG
[ENA]
¡û
>W2010403836
FUYK01000007
Nitrososphaerota
Candidatus Nitrosotalea bavarica SbT1 [FUYK]
544
469
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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