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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147761 (4 seq.)
>A171007479
LN890280
Nitrososphaerota
Candidatus Nitrosotalea devanaterra [LN890280]
1773722
1773646
-
Val
GAC
-
¡û
>W1910285424
FRFC01000003
Nitrososphaerota
Candidatus Nitrosotalea sinensis Nd2 [FRFC]
119600
119674
+
Val
GAC
[ENA]
¡û
>W2010395687
FRFC01000003
Nitrososphaerota
Candidatus Nitrosotalea sinensis Nd2 [FRFC]
119600
119674
+
Val
GAC
[ENA]
¡û
>W2011401260
RCMC01000279
Nitrososphaerota
Candidatus Nitrosotalea sp. FS [RCMC]
6422
6346
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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