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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147779 (5 seq.)
>A173000292
CP012850
Nitrososphaerota
Candidatus Nitrosocosmicus oleophilus MY3 [CP012850]
2284815
2284890
+
Met
CAT
-
¡û
>A173000324
CP017922
Nitrososphaerota
Candidatus Nitrosocosmicus hydrocola G61 [CP017922]
1726377
1726302
-
Met
CAT
-
¡û
>W2030042887
SRPK01000019
Nitrososphaerota
Candidatus Nitrosocosmicus sp. SS [SRPK]
1242
1166
-
Ile2
CAT
[ENA]
¡û
>W2030051351
VOAH01000001
Nitrososphaerota
Candidatus Nitrosocosmicus sp. Kfb [VOAH]
24694
24769
+
Ile2
CAT
[ENA]
¡û
>W2030052620
VUYS01000023
Nitrososphaerota
Candidatus Nitrosocosmicus sp. SS [VUYS]
54134
54210
+
Ile2
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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