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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147783 (48 seq.)
>A171000280
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
785968
785894
-
Lys
TTT
-
¡û
>A171000282
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
785615
785541
-
Lys
TTT
-
¡û
>A171001543
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1633635
1633710
+
Lys
TTT
-
¡û
>A171001545
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1634008
1634083
+
Lys
TTT
-
¡û
>A171002349
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
594418
594344
-
Lys
TTT
-
¡û
>A171002351
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
594054
593980
-
Lys
TTT
-
¡û
>A171002491
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
107968
108042
+
Lys
TTT
-
¡û
>A171002493
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
108321
108395
+
Lys
TTT
-
¡û
>WENV180274896
OBHO01002889
[OBHO] metagenome; water
339
413
+
Lys
TTT
[ENA]
¢þ
>WENV180287211
OBIK01002226
[OBIK] hydrothermal vent metagenome; sea water
82
155
+
Lys
TTT
[ENA]
¢þ
>WENV180316918
OBKJ01001773
[OBKJ] metagenome; hydrothermal vent
424
499
+
Lys
TTT
[ENA]
¢þ
>WENV180317396
OBKJ01141691
[OBKJ] metagenome; hydrothermal vent
1
74
+
Lys
TTT
[ENA]
¢þ
>WENV180332541
OBLD01038379
[OBLD] metagenome; water
330
257
-
Lys
TTT
[ENA]
¢þ
>WENV180332556
OBLD01044523
[OBLD] metagenome; water
1
76
+
Lys
TTT
[ENA]
¢þ
>WENV180581530
OCMK01002959
[OCMK] metagenome; diffuse fluid
310
385
+
Lys
TTT
[ENA]
¢þ
>WENV180582475
OCMO01107287
[OCMO] metagenome; diffuse fluid
149
76
-
Lys
TTT
[ENA]
¢þ
>WENV181206169
OFAT01000056
[OFAT] metagenome; hydrothermal vent
11465
11390
-
Lys
TTT
[ENA]
¢þ
>WENV181206591
OFAW01000375
[OFAW] metagenome; hydrothermal vent
6023
6098
+
Lys
TTT
[ENA]
¢þ
>WENV181207089
OFAY01000447
[OFAY] metagenome; hydrothermal vent
5443
5518
+
Lys
TTT
[ENA]
¢þ
>WENV181208255
OFBB01001491
[OFBB] metagenome; hydrothermal vent
150
75
-
Lys
TTT
[ENA]
¢þ
>WENV181212989
OFBU01003541
[OFBU] metagenome; hydrothermal vent
600
526
-
Lys
TTT
[ENA]
¢þ
>WENV181224147
OFDE01000088
[OFDE] metagenome; hydrothermal vent
7791
7866
+
Lys
TTT
[ENA]
¢þ
>WENV181224149
OFDE01000088
[OFDE] metagenome; hydrothermal vent
8152
8225
+
Lys
TTT
[ENA]
¢þ
>WENV181224734
OFDG01002549
[OFDG] metagenome; hydrothermal vent
1626
1701
+
Lys
TTT
[ENA]
¢þ
>At1037
CP000743
Euryarchaeota
Methanococcus aeolicus Nankai-3 [CP000743]
1377817
1377744
-
Lys
TTT
[Ensembl]
¡û
>At1039
CP000743
Euryarchaeota
Methanococcus aeolicus Nankai-3 [CP000743]
1378194
1378121
-
Lys
TTT
[Ensembl]
¡û
>At1074
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
1517269
1517196
-
Lys
TTT
[Ensembl]
¡û
>At1076
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
1517621
1517548
-
Lys
TTT
[Ensembl]
¡û
>At1092
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
1072206
1072279
+
Lys
TTT
[Ensembl]
¡û
>At1094
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
1072561
1072634
+
Lys
TTT
[Ensembl]
¡û
>At1123
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
113173
113246
+
Lys
TTT
[Ensembl]
¡û
>At1125
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
113526
113599
+
Lys
TTT
[Ensembl]
¡û
>At1166
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
1127238
1127311
+
Lys
TTT
[Ensembl]
¡û
>At1168
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
1127603
1127676
+
Lys
TTT
[Ensembl]
¡û
>W1610000323
AAWI01000002
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
308653
308579
-
Lys
TTT
[ENA]
¡û
>W1610000325
AAWI01000002
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
308301
308227
-
Lys
TTT
[ENA]
¡û
>W1610000374
AAWX01000004
Euryarchaeota
Methanococcus vannielii SB [AAWX]
69153
69228
+
Lys
TTT
[ENA]
¡û
>W1610000376
AAWX01000004
Euryarchaeota
Methanococcus vannielii SB [AAWX]
69519
69595
+
Lys
TTT
[ENA]
¡û
>W1610000442
AAZL01000001
Euryarchaeota
Methanococcus aeolicus Nankai-3 [AAZL]
143982
143907
-
Lys
TTT
[ENA]
¡û
>W1610000444
AAZL01000001
Euryarchaeota
Methanococcus aeolicus Nankai-3 [AAZL]
143605
143530
-
Lys
TTT
[ENA]
¡û
>W1610000473
AAZM01000002
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
700733
700659
-
Lys
TTT
[ENA]
¡û
>W1610000475
AAZM01000002
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
700378
700304
-
Lys
TTT
[ENA]
¡û
>W1610000574
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
1631318
1631244
-
Lys
TTT
[ENA]
¡û
>W1610000576
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
1630965
1630891
-
Lys
TTT
[ENA]
¡û
>W1610000619
ABHB01000002
Euryarchaeota
Methanococcus voltae A3 [ABHB]
81380
81305
-
Lys
TTT
[ENA]
¡û
>W1610002131
AEDA01000005
Euryarchaeota
Methanothermococcus okinawensis IH1 [AEDA]
35215
35141
-
Lys
TTT
[ENA]
¡û
>W1610002133
AEDA01000005
Euryarchaeota
Methanothermococcus okinawensis IH1 [AEDA]
34850
34776
-
Lys
TTT
[ENA]
¡û
>W1610018882
AQXV01000024
Euryarchaeota
Methanothermococcus thermolithotrophicus DSM 2095 [AQXV]
17354
17429
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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