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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147790 (31 seq.)
>A171000270
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
1497621
1497696
+
Ala
GGC
-
¡û
>A171001559
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
172642
172567
-
Ala
GGC
-
¡û
>A171002515
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
1143006
1142931
-
Ala
GGC
-
¡û
>WENV180274891
OBHO01002697
[OBHO] metagenome; water
257
332
+
Ala
GGC
[ENA]
¢þ
>WENV180316865
OBKJ01000416
[OBKJ] metagenome; hydrothermal vent
3823
3898
+
Ala
GGC
[ENA]
¢þ
>WENV180332367
OBLD01000995
[OBLD] metagenome; water
2252
2177
-
Ala
GGC
[ENA]
¢þ
>WENV180581486
OCMK01000124
[OCMK] metagenome; diffuse fluid
2365
2440
+
Ala
GGC
[ENA]
¢þ
>WENV180582108
OCMO01000696
[OCMO] metagenome; diffuse fluid
1599
1674
+
Ala
GGC
[ENA]
¢þ
>WENV181206219
OFAT01000521
[OFAT] metagenome; hydrothermal vent
3070
3145
+
Ala
GGC
[ENA]
¢þ
>WENV181206636
OFAW01000740
[OFAW] metagenome; hydrothermal vent
828
753
-
Ala
GGC
[ENA]
¢þ
>WENV181207090
OFAY01000450
[OFAY] metagenome; hydrothermal vent
5254
5329
+
Ala
GGC
[ENA]
¢þ
>WENV181207471
OFAZ01000643
[OFAZ] metagenome; hydrothermal vent
3725
3800
+
Ala
GGC
[ENA]
¢þ
>WENV181207844
OFBA01000870
[OFBA] metagenome; hydrothermal vent
3928
4003
+
Ala
GGC
[ENA]
¢þ
>WENV181208232
OFBB01000865
[OFBB] metagenome; hydrothermal vent
281
206
-
Ala
GGC
[ENA]
¢þ
>WENV181208618
OFBC01000332
[OFBC] metagenome; hydrothermal vent
3752
3827
+
Ala
GGC
[ENA]
¢þ
>WENV181223803
OFDD01000467
[OFDD] metagenome; hydrothermal vent
2926
3001
+
Ala
GGC
[ENA]
¢þ
>WENV181224183
OFDE01000466
[OFDE] metagenome; hydrothermal vent
267
192
-
Ala
GGC
[ENA]
¢þ
>WENV181224399
OFDF01000297
[OFDF] metagenome; hydrothermal vent
2284
2209
-
Ala
GGC
[ENA]
¢þ
>WENV181224641
OFDG01000415
[OFDG] metagenome; hydrothermal vent
4324
4399
+
Ala
GGC
[ENA]
¢þ
>WENV181225325
OFDI01000118
[OFDI] metagenome; hydrothermal vent
9344
9419
+
Ala
GGC
[ENA]
¢þ
>At1026
CP000743
Euryarchaeota
Methanococcus aeolicus Nankai-3 [CP000743]
838331
838258
-
Ala
GGC
[Ensembl]
¡û
>At1050
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
492159
492232
+
Ala
GGC
[Ensembl]
¡û
>At1102
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
326141
326068
-
Ala
GGC
[Ensembl]
¡û
>At1144
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
1049964
1049891
-
Ala
GGC
[Ensembl]
¡û
>At1178
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
435277
435204
-
Ala
GGC
[Ensembl]
¡û
>W1610000311
AAWI01000001
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
4161
4237
+
Ala
GGC
[ENA]
¡û
>W1610000361
AAWX01000001
Euryarchaeota
Methanococcus vannielii SB [AAWX]
173280
173207
-
Ala
GGC
[ENA]
¡û
>W1610000437
AAZL01000001
Euryarchaeota
Methanococcus aeolicus Nankai-3 [AAZL]
1173619
1173544
-
Ala
GGC
[ENA]
¡û
>W1610000458
AAZM01000001
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
662569
662645
+
Ala
GGC
[ENA]
¡û
>W1610000565
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
598391
598467
+
Ala
GGC
[ENA]
¡û
>W1610000603
ABHB01000001
Euryarchaeota
Methanococcus voltae A3 [ABHB]
1202169
1202094
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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