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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147836 (19 seq.)
>W1711326827
MBGA01000023
Campylobacterota
Campylobacter pinnipediorum subsp. caledonicus [MBGA]
59946
59870
-
Arg
TCT
[ENA]
¡û
>W1711350446
MCRK01000044
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum [MCRK]
20328
20404
+
Arg
TCT
[ENA]
¡û
>W1711350487
MCRL01000026
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum [MCRL]
20318
20394
+
Arg
TCT
[ENA]
¡û
>W1711351853
MDCT01000008
Campylobacterota
Campylobacter pinnipediorum RM18812 [MDCT]
19473
19549
+
Arg
TCT
[ENA]
¡û
>W1711351880
MDCU01000005
Campylobacterota
Campylobacter pinnipediorum RM18813 [MDCU]
19677
19753
+
Arg
TCT
[ENA]
¡û
>W1711351924
MDCV01000005
Campylobacterota
Campylobacter pinnipediorum RM18906 [MDCV]
52897
52973
+
Arg
TCT
[ENA]
¡û
>C171017229
CP012546
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17260 [CP012546]
481613
481689
+
Arg
TCT
-
¡û
>C171017273
CP012547
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17261 [CP012547]
417876
417952
+
Arg
TCT
-
¡û
>C171017317
CP012548
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17262 [CP012548]
412437
412513
+
Arg
TCT
-
¡û
>C171055135
CP017018
Campylobacterota
Campylobacter pinnipediorum subsp. caledonicus M302/10/6 [CP017018]
497138
497214
+
Arg
TCT
-
¡û
>C171059636
CP017258
Campylobacterota
Campylobacter pinnipediorum subsp. caledonicus M341/11/05 [CP017258]
516417
516493
+
Arg
TCT
-
¡û
>W141052949
ANNE01000003
Campylobacterota
Campylobacter concisus UNSW3 [ANNE]
77114
77038
-
Arg
TCT
[ENA]
¡û
>WENV180721833
ODGL01016991
[ODGL] human metagenome; G_DNA_Subgingival plaque
144
68
-
Arg
TCT
[ENA]
¢þ
>WENV180783428
ODIQ01006422
[ODIQ] human metagenome; G_DNA_Tongue dorsum
407
483
+
Arg
TCT
[ENA]
¢þ
>WENV180819352
ODJR01000054
[ODJR] human metagenome; G_DNA_Tongue dorsum
27013
27089
+
Arg
TCT
[ENA]
¢þ
>WENV180831080
ODKB01035755
[ODKB] human metagenome; G_DNA_Tongue dorsum
516
440
-
Arg
TCT
[ENA]
¢þ
>WENV180897681
ODNI01054688
[ODNI] human metagenome; G_DNA_Tongue dorsum
301
377
+
Arg
TCT
[ENA]
¢þ
>WENV183515392
OMKS01060739
[OMKS] sediment metagenome; hot spring sediment
629
705
+
Arg
TCT
[ENA]
¢þ
>WENV183705522
PDWI01001717
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
10584
10660
+
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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