This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147851 (35 seq.)
>C171083802
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
134408
134484
+
Gln
TTG
-
¡û
>C171094214
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
71632
71708
+
Gln
TTG
-
¡û
>WENV016756
AACY020469254
Marine microbial communities from Global Ocean Sampling (GOS)
4273
4195
-
Gln
TTG
[ENA]
>WENV180107221
OAPF01065900
[OAPF] marine metagenome; ENVO:00002010
182
258
+
Gln
TTG
[ENA]
¢þ
>WENV180209598
OBAL01006228
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
341
265
-
Gln
TTG
[ENA]
¢þ
>WENV180359631
OBNS01007408
[OBNS] marine metagenome; Seawater
570
494
-
Gln
TTG
[ENA]
¢þ
>WENV180367782
OBOF01003670
[OBOF] marine metagenome; ENVO:00002010
1035
959
-
Gln
TTG
[ENA]
¢þ
>WENV180369732
OBOH01001020
[OBOH] marine metagenome; ENVO:00002010
1866
1790
-
Gln
TTG
[ENA]
¢þ
>WENV180391592
OBPN01010280
[OBPN] marine metagenome; seawater
781
705
-
Gln
TTG
[ENA]
¢þ
>WENV180392741
OBPP01006592
[OBPP] marine metagenome; ENVO:00002042
63
139
+
Gln
TTG
[ENA]
¢þ
>WENV180393683
OBPR01001018
[OBPR] marine metagenome; ENVO:00002042
1720
1644
-
Gln
TTG
[ENA]
¢þ
>WENV180637614
OCRG01061888
[OCRG] marine metagenome; seawater
165
241
+
Gln
TTG
[ENA]
¢þ
>WENV180762685
ODHZ01265939
[ODHZ] human metagenome; G_DNA_Stool
105
29
-
Gln
TTG
[ENA]
¢þ
>WENV180851380
ODKV01062143
[ODKV] human metagenome; G_DNA_Stool
63
139
+
Gln
TTG
[ENA]
¢þ
>WENV181883296
OGXI01003409
[OGXI] human gut metagenome; faeces
10453
10529
+
Gln
TTG
[ENA]
¢þ
>WENV181902668
OGXW01063030
[OGXW] human gut metagenome; faeces
151
227
+
Gln
TTG
[ENA]
¢þ
>WENV181915908
OGYF01025235
[OGYF] human gut metagenome; faeces
41
117
+
Gln
TTG
[ENA]
¢þ
>WENV181929420
OGYO01023429
[OGYO] human gut metagenome; faeces
1883
1959
+
Gln
TTG
[ENA]
¢þ
>WENV181973345
OHAA01029962
[OHAA] human gut metagenome; faeces
516
592
+
Gln
TTG
[ENA]
¢þ
>WENV182009874
OHBJ01065341
[OHBJ] human gut metagenome; faeces
744
668
-
Gln
TTG
[ENA]
¢þ
>WENV182538058
OIXH01034592
[OIXH] human gut metagenome; faeces
445
521
+
Gln
TTG
[ENA]
¢þ
>WENV182885840
OKSC01031608
[OKSC] human gut metagenome; faeces
1161
1085
-
Gln
TTG
[ENA]
¢þ
>WENV183575642
OOCI01004449
[OOCI] human gut metagenome; human gut
4902
4978
+
Gln
TTG
[ENA]
¢þ
>WENV170068696
CDZP01015821
[CDZP] gut metagenome; human stools
81
157
+
Gln
TTG
[ENA]
¢þ
>WENV170070873
CDZQ01038822
[CDZQ] gut metagenome; human stools
575
651
+
Gln
TTG
[ENA]
¢þ
>WENV170151043
CEOC01169739
[CEOC] marine metagenome genome assembly TARA_036_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3143
3067
-
Gln
TTG
[ENA]
¢þ
>WENV170166963
CEOO01109780
[CEOO] marine metagenome genome assembly TARA_036_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
26970
27046
+
Gln
TTG
[ENA]
¢þ
>WENV170688950
LFRM01269424
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
211
287
+
Gln
TTG
[ENA]
¢þ
>WENV170842264
MDSZ01237074
[MDSZ] marine metagenome; seawater
129317
129241
-
Gln
TTG
[ENA]
¢þ
>W09111754
ABXG01000003
Betaproteobacteria
beta proteobacterium KB13 [ABXG]
131328
131252
-
Gln
TTG
[ENA]
¡û
>W09119229
ACDP01000070
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
1
77
+
Gln
TTG
[ENA]
¡û
>W09119269
ACDQ01000017
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
78752
78676
-
Gln
TTG
[ENA]
¡û
>C161030827
CP011001
Betaproteobacteria
Methylophilales bacterium MBRSF5 [CP011001]
930207
930283
+
Gln
TTG
[Ensembl]
¡û
>C161030869
CP011002
Betaproteobacteria
Methylophilales bacterium MBRS-H7 [CP011002]
988416
988340
-
Gln
TTG
[Ensembl]
¡û
>C161030903
CP011003
Betaproteobacteria
Methylophilales bacterium MBRSG12 [CP011003]
988416
988340
-
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK