This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147863 (85 seq.)
>W1710876975
LMPS01000005
Bacteroidota
Dyadobacter sp. Leaf189 [LMPS]
813231
813155
-
Met
CAT
[ENA]
¡û
>W1711115569
LUAH01000033
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
50002
49926
-
Met
CAT
[ENA]
¡û
>W1711115570
LUAH01000033
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
49635
49559
-
Met
CAT
[ENA]
¡û
>W1711506314
MKWH01000037
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
175635
175559
-
Met
CAT
[ENA]
¡û
>W1711506315
MKWH01000037
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
175268
175192
-
Met
CAT
[ENA]
¡û
>W1711712781
MTCM01000004
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
359294
359218
-
Met
CAT
[ENA]
¡û
>W131167800
ARDO01000004
Bacteroidota
Pontibacter roseus DSM 17521 [ARDO]
806156
806230
+
Met
CAT
[ENA]
¡û
>W131221747
AUAS01000002
Bacteroidota
Dyadobacter alkalitolerans DSM 23607 [AUAS]
43733
43809
+
Met
CAT
[ENA]
¡û
>C171089527
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
5700150
5700074
-
Met
CAT
-
¡û
>C171089528
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
5699783
5699707
-
Met
CAT
-
¡û
>C171118475
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
5413512
5413436
-
Met
CAT
-
¡û
>C171118476
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
5413145
5413069
-
Met
CAT
-
¡û
>WENV180391324
OBPM01088486
[OBPM] marine metagenome; ENVO:00002010
104
178
+
Met
CAT
[ENA]
¢þ
>WENV180637052
OCRF01181149
[OCRF] marine metagenome; niskin bottle
143
69
-
Met
CAT
[ENA]
¢þ
>WENV181383968
OFRH01002907
[OFRH] wastewater metagenome; Exp Tend NO 100WW
1712
1786
+
Met
CAT
[ENA]
¢þ
>WENV181836439
OGVJ01007248
[OGVJ] freshwater metagenome; freshwater
1038
1112
+
Met
CAT
[ENA]
¢þ
>WENV181838805
OGVN01021847
[OGVN] freshwater metagenome; freshwater
534
460
-
Met
CAT
[ENA]
¢þ
>WENV181843490
OGVU01019909
[OGVU] freshwater metagenome; freshwater
520
594
+
Met
CAT
[ENA]
¢þ
>WENV183726707
PJTO01000083
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
80465
80391
-
Met
CAT
[ENA]
¢þ
>WENV183726708
PJTO01000083
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
80098
80022
-
Met
CAT
[ENA]
¢þ
>WENV183727710
PJTP01000097
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
80465
80391
-
Met
CAT
[ENA]
¢þ
>WENV183727711
PJTP01000097
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
80098
80022
-
Met
CAT
[ENA]
¢þ
>WENV183728098
PJTP01033437
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
24
98
+
Met
CAT
[ENA]
¢þ
>WENV183728099
PJTP01033437
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
391
465
+
Met
CAT
[ENA]
¢þ
>WENV183728177
PJTP01056439
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
224
298
+
Met
CAT
[ENA]
¢þ
>WENV183728643
PJTQ01000226
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
10365
10291
-
Met
CAT
[ENA]
¢þ
>WENV183728644
PJTQ01000226
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
9998
9922
-
Met
CAT
[ENA]
¢þ
>WENV183730582
PJTS01000152
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
14220
14294
+
Met
CAT
[ENA]
¢þ
>WENV183732329
PJTX01000018
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
67329
67403
+
Met
CAT
[ENA]
¢þ
>WENV183733091
PJTY01000058
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
67329
67403
+
Met
CAT
[ENA]
¢þ
>WENV183734121
PJTZ01000069
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
67329
67403
+
Met
CAT
[ENA]
¢þ
>WENV183735038
PJUA01000527
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
9368
9442
+
Met
CAT
[ENA]
¢þ
>WENV183735039
PJUA01000527
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
9735
9811
+
Met
CAT
[ENA]
¢þ
>WENV183735137
PJUA01001192
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
10
84
+
Met
CAT
[ENA]
¢þ
>WENV183735138
PJUA01001192
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
377
451
+
Met
CAT
[ENA]
¢þ
>WENV183735692
PJUB01000652
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
8906
8832
-
Met
CAT
[ENA]
¢þ
>WENV183735693
PJUB01000652
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
8539
8463
-
Met
CAT
[ENA]
¢þ
>WENV183735727
PJUB01000944
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
6114
6040
-
Met
CAT
[ENA]
¢þ
>WENV183735728
PJUB01000944
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
5747
5673
-
Met
CAT
[ENA]
¢þ
>WENV183736358
PJUC01001080
[PJUC] soil metagenome; Soil enriched on filter paper
6001
5927
-
Met
CAT
[ENA]
¢þ
>WENV183736359
PJUC01001080
[PJUC] soil metagenome; Soil enriched on filter paper
5634
5560
-
Met
CAT
[ENA]
¢þ
>WENV183736442
PJUC01003666
[PJUC] soil metagenome; Soil enriched on filter paper
238
314
+
Met
CAT
[ENA]
¢þ
>WENV183737166
PJUD01000808
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
173
247
+
Met
CAT
[ENA]
¢þ
>WENV183737176
PJUD01001059
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
173
247
+
Met
CAT
[ENA]
¢þ
>WENV183737177
PJUD01001059
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
540
616
+
Met
CAT
[ENA]
¢þ
>WENV183739010
PJUE01000902
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
173
247
+
Met
CAT
[ENA]
¢þ
>WENV183739127
PJUE01002040
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
5432
5358
-
Met
CAT
[ENA]
¢þ
>WENV183739128
PJUE01002040
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
5065
4989
-
Met
CAT
[ENA]
¢þ
>WENV183740282
PJUF01000978
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4975
5049
+
Met
CAT
[ENA]
¢þ
>WENV183740350
PJUF01001310
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
6076
6150
+
Met
CAT
[ENA]
¢þ
>WENV183740965
PJUF01022246
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
883
809
-
Met
CAT
[ENA]
¢þ
>WENV183740966
PJUF01022246
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
516
440
-
Met
CAT
[ENA]
¢þ
>WENV183741495
PJUG01000031
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
57658
57732
+
Met
CAT
[ENA]
¢þ
>WENV183741496
PJUG01000031
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
58025
58099
+
Met
CAT
[ENA]
¢þ
>WENV183741976
PJUH01000024
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
57658
57732
+
Met
CAT
[ENA]
¢þ
>WENV183741977
PJUH01000024
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
58025
58099
+
Met
CAT
[ENA]
¢þ
>WENV183742659
PJUI01000051
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
57658
57732
+
Met
CAT
[ENA]
¢þ
>WENV183742660
PJUI01000051
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
58025
58099
+
Met
CAT
[ENA]
¢þ
>WENV183743154
PJUJ01000066
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
57580
57506
-
Met
CAT
[ENA]
¢þ
>WENV183743155
PJUJ01000066
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
57213
57139
-
Met
CAT
[ENA]
¢þ
>WENV183743892
PJUK01000030
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
57658
57732
+
Met
CAT
[ENA]
¢þ
>WENV183743893
PJUK01000030
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
58025
58099
+
Met
CAT
[ENA]
¢þ
>WENV170819139
MDSX01086484
[MDSX] marine metagenome; seawater
309
233
-
Met
CAT
[ENA]
¢þ
>WENV170876449
MDTC01040055
[MDTC] marine metagenome; seawater
2539
2463
-
Met
CAT
[ENA]
¢þ
>WENV170929837
MDTG01156869
[MDTG] marine metagenome; seawater
5398
5324
-
Met
CAT
[ENA]
¢þ
>C181177191
CP029346
Bacteroidota
Aquirufa nivalisilvae HME7025 [CP029346]
1819808
1819734
-
Met
CAT
-
¡û
>C191222295
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
2771376
2771450
+
Met
CAT
-
¡û
>W141701978
JMLD01000015
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
200103
200027
-
Met
CAT
[ENA]
¡û
>W141731390
JNJB01000007
Bacteroidota
Dyadobacter crusticola DSM 16708 [JNJB]
172834
172910
+
Met
CAT
[ENA]
¡û
>W1910664343
MCAQ01000003
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
62879
62953
+
Met
CAT
[ENA]
¡û
>W1910664344
MCAQ01000003
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
63246
63322
+
Met
CAT
[ENA]
¡û
>W1910941832
NJFZ01000020
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
156
82
-
Met
CAT
[ENA]
¡û
>W1910941836
NJFZ01000021
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
77585
77511
-
Met
CAT
[ENA]
¡û
>W1911701504
QNUL01000001
Bacteroidota
Dyadobacter luteus RS19 [QNUL]
103872
103946
+
Met
CAT
[ENA]
¡û
>W1810002579
BEYR01000008
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
107244
107170
-
Met
CAT
[ENA]
¡û
>W1810503721
QBKI01000011
Bacteroidota
Pontibacter mucosus DSM 100162 [QBKI]
159793
159717
-
Met
CAT
[ENA]
¡û
>W1810531947
QCXX01000010
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
68631
68705
+
Met
CAT
[ENA]
¡û
>C11112273
CP002305
Bacteroidota
Leadbetterella byssophila DSM 17132 [CP002305]
1001354
1001428
+
Met
CAT
[Ensembl]
¡û
>W1511590237
LBGU01000018
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
49029
49105
+
Met
CAT
[ENA]
¡û
>W1511590238
LBGU01000018
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
49396
49472
+
Met
CAT
[ENA]
¡û
>W1610739321
LMPS01000005
Bacteroidota
Dyadobacter sp. Leaf189 [LMPS]
813231
813155
-
Met
CAT
[ENA]
¡û
>W1710520388
FNFO01000006
Bacteroidota
Catalinimonas alkaloidigena [FNFO]
40712
40788
+
Met
CAT
[ENA]
¡û
>W1710540980
FNXY01000004
Bacteroidota
Dyadobacter koreensis [FNXY]
232743
232819
+
Met
CAT
[ENA]
¡û
>W1710562144
FOOT01000001
Bacteroidota
Pontibacter chinhatensis [FOOT]
422958
423034
+
Met
CAT
[ENA]
¡û
>W1710600005
FTPP01000001
Bacteroidota
Pontibacter indicus [FTPP]
1131349
1131423
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK