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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147894 (50 seq.)
>W1710879718
LMRV01000078
Bacillota
Paenibacillus sp. Soil522 [LMRV]
758
840
+
Leu
TAG
[ENA]
¡û
>W1711309589
MAQX01000009
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
12277
12196
-
Leu
TAG
[ENA]
¡û
>W1711309630
MAQX01000037
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
207120
207038
-
Leu
TAG
[ENA]
¡û
>W1711309631
MAQX01000037
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
206952
206870
-
Leu
TAG
[ENA]
¡û
>W1711309632
MAQX01000037
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
206784
206702
-
Leu
TAG
[ENA]
¡û
>W1711309633
MAQX01000037
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
206616
206534
-
Leu
TAG
[ENA]
¡û
>W141251558
CBQR020000058
Bacillota
Gorillibacterium massiliense G5 [CBQR]
782
864
+
Leu
TAG
[ENA]
¡û
>W141255898
CBVJ010000101
Bacillota
Paenibacillus gorillae G1 [CBVJ]
44919
44837
-
Leu
TAG
[ENA]
¡û
>WENV183735133
PJUA01001177
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
6060
5981
-
Leu
TAG
[ENA]
¢þ
>C191125209
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
1814866
1814948
+
Leu
TAG
-
¡û
>C191125262
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
199718
199636
-
Leu
TAG
-
¡û
>W1910154704
BILY01000085
Bacillota
Paenibacillus glycanilyticus NBRC 16618 [BILY]
267
349
+
Leu
TAG
[ENA]
¡û
>C09108234
CP001656
Bacillota
Paenibacillus sp. JDR-2 [CP001656]
6471757
6471675
-
Leu
TAG
[Ensembl]
¡û
>W1911771055
QXJM01000016
Bacillota
Cohnella faecalis K2E09-144 [QXJM]
43918
44000
+
Leu
TAG
[ENA]
¡û
>W1810671913
QJTA01000019
Bacillota
Paenibacillus sp. OV191 [QJTA]
858
940
+
Leu
TAG
[ENA]
¡û
>W1810671914
QJTA01000019
Bacillota
Paenibacillus sp. OV191 [QJTA]
1037
1119
+
Leu
TAG
[ENA]
¡û
>W1810671944
QJTA01000038
Bacillota
Paenibacillus sp. OV191 [QJTA]
16336
16254
-
Leu
TAG
[ENA]
¡û
>W1810697183
QLUW01000003
Bacillota
Paenibacillus montanisoli RA17 [QLUW]
1002
1084
+
Leu
TAG
[ENA]
¡û
>W1810697210
QLUW01000006
Bacillota
Paenibacillus montanisoli RA17 [QLUW]
684
766
+
Leu
TAG
[ENA]
¡û
>W1810697219
QLUW01000010
Bacillota
Paenibacillus montanisoli RA17 [QLUW]
30988
30906
-
Leu
TAG
[ENA]
¡û
>W1810701767
QMFB01000024
Bacillota
Paenibacillus contaminans CKOBP-6 [QMFB]
585
667
+
Leu
TAG
[ENA]
¡û
>W1810759038
QPJD01000006
Bacillota
Paenibacillus prosopidis CECT 7506 [QPJD]
746
828
+
Leu
TAG
[ENA]
¡û
>W1810787766
QRDY01000025
Bacillota
Cohnella lupini CECT 8236 [QRDY]
809
891
+
Leu
TAG
[ENA]
¡û
>W1810860944
QTTN01000020
Bacillota
Paenibacillus taihuensis CGMCC 1.10966 [QTTN]
119629
119550
-
Leu
TAG
[ENA]
¡û
>C11117491
CP002869
Bacillota
Paenibacillus mucilaginosus KNP414 [CP002869]
8188807
8188725
-
Leu
TAG
[Ensembl]
¡û
>C121009388
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
8258248
8258166
-
Leu
TAG
[Ensembl]
¡û
>C121013047
CP003422
Bacillota
Paenibacillus mucilaginosus K02 [CP003422]
8299894
8299812
-
Leu
TAG
[Ensembl]
¡û
>W1610048316
BBEA01000083
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
19369
19287
-
Leu
TAG
[ENA]
¡û
>W1610048459
BBEC01000122
Bacillota
Paenibacillus sp. YK5 [BBEC]
545
624
+
Leu
TAG
[ENA]
¡û
>W1610742064
LMRV01000078
Bacillota
Paenibacillus sp. Soil522 [LMRV]
758
840
+
Leu
TAG
[ENA]
¡û
>W1610742853
LMSJ01000042
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
23502
23421
-
Leu
TAG
[ENA]
¡û
>W1610742866
LMSJ01000053
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
589
672
+
Leu
TAG
[ENA]
¡û
>W1610742882
LMSJ01000060
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
243488
243404
-
Leu
TAG
[ENA]
¡û
>W1611057246
MAQX01000009
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
12277
12196
-
Leu
TAG
[ENA]
¡û
>W1611057287
MAQX01000037
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
207120
207038
-
Leu
TAG
[ENA]
¡û
>W1611057288
MAQX01000037
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
206952
206870
-
Leu
TAG
[ENA]
¡û
>W1611057289
MAQX01000037
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
206784
206702
-
Leu
TAG
[ENA]
¡û
>W1611057290
MAQX01000037
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
206616
206534
-
Leu
TAG
[ENA]
¡û
>W1710044826
BBEA01000083
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
19369
19287
-
Leu
TAG
[ENA]
¡û
>W1710044969
BBEC01000122
Bacillota
Paenibacillus sp. YK5 [BBEC]
545
624
+
Leu
TAG
[ENA]
¡û
>W1710529277
FNNV01000029
Bacillota
Paenibacillus sp. CF384 [FNNV]
56593
56511
-
Leu
TAG
[ENA]
¡û
>W1710529284
FNNV01000032
Bacillota
Paenibacillus sp. CF384 [FNNV]
411
493
+
Leu
TAG
[ENA]
¡û
>W1710529294
FNNV01000040
Bacillota
Paenibacillus sp. CF384 [FNNV]
16274
16192
-
Leu
TAG
[ENA]
¡û
>W1710546688
FOCJ01000007
Bacillota
Paenibacillus sp. OV219 [FOCJ]
1563
1645
+
Leu
TAG
[ENA]
¡û
>W1710546701
FOCJ01000008
Bacillota
Paenibacillus sp. OV219 [FOCJ]
963
1045
+
Leu
TAG
[ENA]
¡û
>W1710559584
FOMT01000002
Bacillota
Paenibacillus catalpae [FOMT]
832
914
+
Leu
TAG
[ENA]
¡û
>W1710567962
FOTE01000017
Bacillota
Paenibacillus sp. 1_12 [FOTE]
712
794
+
Leu
TAG
[ENA]
¡û
>W1710576628
FPAD01000003
Bacillota
Paenibacillus sp. BC26 [FPAD]
732
811
+
Leu
TAG
[ENA]
¡û
>W1710576654
FPAD01000007
Bacillota
Paenibacillus sp. BC26 [FPAD]
189388
189306
-
Leu
TAG
[ENA]
¡û
>W1710576667
FPAD01000011
Bacillota
Paenibacillus sp. BC26 [FPAD]
53803
53721
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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