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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147913 (97 seq.)
>W1711096797
LTIB01000058
Actinomycetota
Corynebacterium sp. HMSC071F07 [LTIB]
25189
25113
-
Arg
TCT
[ENA]
¡û
>W1711106005
LTRK01000001
Actinomycetota
Corynebacterium sp. HMSC036D03 [LTRK]
32207
32131
-
Arg
TCT
[ENA]
¡û
>W1711109458
LTUR01000042
Actinomycetota
Corynebacterium sp. HMSC078C09 [LTUR]
21175
21249
+
Arg
TCT
[ENA]
¡û
>W1711110836
LTVX01000078
Actinomycetota
Corynebacterium sp. HMSC076D02 [LTVX]
24933
25009
+
Arg
TCT
[ENA]
¡û
>W1711112406
LTXJ01000081
Actinomycetota
Corynebacterium sp. HMSC077D03 [LTXJ]
8918
8842
-
Arg
TCT
[ENA]
¡û
>W1711112883
LTXU01000092
Actinomycetota
Corynebacterium sp. HMSC078H07 [LTXU]
5026
4952
-
Arg
TCT
[ENA]
¡û
>W1711185971
LWNV01000022
Actinomycetota
Corynebacterium sp. HMSC08C04 [LWNV]
78961
78885
-
Arg
TCT
[ENA]
¡û
>W1711186298
LWOC01000033
Actinomycetota
Corynebacterium sp. HMSC06G04 [LWOC]
65487
65411
-
Arg
TCT
[ENA]
¡û
>W1711186390
LWOE01000032
Actinomycetota
Corynebacterium sp. HMSC06D04 [LWOE]
64830
64754
-
Arg
TCT
[ENA]
¡û
>W1711186451
LWOF01000066
Actinomycetota
Corynebacterium sp. HMSC06C06 [LWOF]
35460
35534
+
Arg
TCT
[ENA]
¡û
>W1711186607
LWOI01000123
Actinomycetota
Corynebacterium sp. HMSC05E07 [LWOI]
22516
22590
+
Arg
TCT
[ENA]
¡û
>W1711186639
LWOJ01000048
Actinomycetota
Corynebacterium sp. HMSC05D08 [LWOJ]
11538
11612
+
Arg
TCT
[ENA]
¡û
>C171001927
CP009246
Actinomycetota
Corynebacterium flavescens OJ8 [CP009246]
2111204
2111282
+
Arg
TCT
-
¡û
>C171117457
CP021252
Actinomycetota
Corynebacterium striatum KC-Na-01 [CP021252]
741493
741419
-
Arg
TCT
-
¡û
>WENV180228549
OBCD01000132
[OBCD] human skin metagenome; Infant 2 DOL 22 skin
28774
28849
+
Arg
TCT
[ENA]
¢þ
>WENV180711566
ODFP01002524
[ODFP] human metagenome; G_DNA_Anterior nares
116
41
-
Arg
TCT
[ENA]
¢þ
>WENV180711713
ODFQ01003270
[ODFQ] human metagenome; G_DNA_Anterior nares
64
139
+
Arg
TCT
[ENA]
¢þ
>WENV180766234
ODIE01000100
[ODIE] human metagenome; G_DNA_Anterior nares
5070
4995
-
Arg
TCT
[ENA]
¢þ
>WENV180836509
ODKF01000221
[ODKF] human metagenome; G_DNA_Anterior nares
5006
4931
-
Arg
TCT
[ENA]
¢þ
>WENV180836549
ODKF01000745
[ODKF] human metagenome; G_DNA_Anterior nares
163
88
-
Arg
TCT
[ENA]
¢þ
>WENV180844717
ODKO01000294
[ODKO] human metagenome; G_DNA_Anterior nares
45
120
+
Arg
TCT
[ENA]
¢þ
>WENV180878860
ODLY01000390
[ODLY] human metagenome; G_DNA_Anterior nares
3890
3965
+
Arg
TCT
[ENA]
¢þ
>WENV180916288
ODTC01001868
[ODTC] human metagenome; G_DNA_Anterior nares
1142
1067
-
Arg
TCT
[ENA]
¢þ
>WENV180917872
ODTE01000439
[ODTE] human metagenome; G_DNA_Anterior nares
2619
2544
-
Arg
TCT
[ENA]
¢þ
>WENV180918007
ODTF01000016
[ODTF] human metagenome; G_DNA_Anterior nares
29301
29226
-
Arg
TCT
[ENA]
¢þ
>WENV180937494
ODTW01001359
[ODTW] human metagenome; G_DNA_Anterior nares
621
696
+
Arg
TCT
[ENA]
¢þ
>WENV180966768
ODUR01006291
[ODUR] human metagenome; G_DNA_Anterior nares
81
6
-
Arg
TCT
[ENA]
¢þ
>WENV180972492
ODUV01002384
[ODUV] human metagenome; G_DNA_Anterior nares
935
860
-
Arg
TCT
[ENA]
¢þ
>WENV180984587
ODVH01003251
[ODVH] human metagenome; G_DNA_Anterior nares
110
35
-
Arg
TCT
[ENA]
¢þ
>WENV180989589
ODVM01004405
[ODVM] human metagenome; G_DNA_Anterior nares
131
56
-
Arg
TCT
[ENA]
¢þ
>WENV181000323
ODVU01005330
[ODVU] human metagenome; G_DNA_Anterior nares
273
348
+
Arg
TCT
[ENA]
¢þ
>WENV181010069
ODWG01000326
[ODWG] human metagenome; G_DNA_Anterior nares
6567
6492
-
Arg
TCT
[ENA]
¢þ
>WENV181010101
ODWG01000861
[ODWG] human metagenome; G_DNA_Anterior nares
3354
3279
-
Arg
TCT
[ENA]
¢þ
>WENV181040324
ODXR01000016
[ODXR] human metagenome; G_DNA_Anterior nares
3569
3494
-
Arg
TCT
[ENA]
¢þ
>WENV181119523
OEFI01000039
[OEFI] human metagenome; G_DNA_Anterior nares
8169
8244
+
Arg
TCT
[ENA]
¢þ
>WENV181119613
OEFI01002591
[OEFI] human metagenome; G_DNA_Anterior nares
378
303
-
Arg
TCT
[ENA]
¢þ
>WENV181131416
OEGC01000045
[OEGC] human metagenome; G_DNA_Anterior nares
99
24
-
Arg
TCT
[ENA]
¢þ
>WENV181212285
OFBO01000064
[OFBO] metagenome; hydrothermal vent
4568
4494
-
Arg
TCT
[ENA]
¢þ
>W141154873
AXLN01000005
Actinomycetota
Corynebacterium sp. KPL2004 [AXLN]
67565
67489
-
Arg
TCT
[ENA]
¡û
>W141154921
AXLO01000004
Actinomycetota
Corynebacterium sp. KPL1998 [AXLO]
765678
765754
+
Arg
TCT
[ENA]
¡û
>W141154981
AXLP01000003
Actinomycetota
Corynebacterium sp. KPL1996 [AXLP]
767753
767829
+
Arg
TCT
[ENA]
¡û
>W141155107
AXLS01000002
Actinomycetota
Corynebacterium sp. KPL1986 [AXLS]
762406
762482
+
Arg
TCT
[ENA]
¡û
>W141155209
AXLU01000005
Actinomycetota
Corynebacterium sp. KPL1859 [AXLU]
164740
164816
+
Arg
TCT
[ENA]
¡û
>W141155353
AXLX01000003
Actinomycetota
Corynebacterium sp. KPL1855 [AXLX]
4438
4362
-
Arg
TCT
[ENA]
¡û
>W141155434
AXLY01000008
Actinomycetota
Corynebacterium sp. KPL1824 [AXLY]
52883
52959
+
Arg
TCT
[ENA]
¡û
>W141155525
AXMA01000003
Actinomycetota
Corynebacterium sp. KPL1818 [AXMA]
64990
64914
-
Arg
TCT
[ENA]
¡û
>W141155605
AXMC01000002
Actinomycetota
Corynebacterium sp. KPL1814 [AXMC]
65182
65106
-
Arg
TCT
[ENA]
¡û
>WENV182641943
OJLL01000050
[OJLL] metagenome; surface
1062
988
-
Arg
TCT
[ENA]
¢þ
>WENV182642217
OJLL01006535
[OJLL] metagenome; surface
1116
1190
+
Arg
TCT
[ENA]
¢þ
>WENV182642983
OJLS01000023
[OJLS] metagenome; surface
14682
14607
-
Arg
TCT
[ENA]
¢þ
>WENV182645773
OJLZ01002347
[OJLZ] metagenome; surface
1808
1883
+
Arg
TCT
[ENA]
¢þ
>WENV182646512
OJMB01001156
[OJMB] metagenome; surface
1363
1289
-
Arg
TCT
[ENA]
¢þ
>WENV182646581
OJMC01000008
[OJMC] metagenome; surface
18312
18386
+
Arg
TCT
[ENA]
¢þ
>WENV182646631
OJMC01000175
[OJMC] metagenome; surface
4401
4476
+
Arg
TCT
[ENA]
¢þ
>WENV182834024
OKEY01000266
[OKEY] human gut metagenome; human gut
132
57
-
Arg
TCT
[ENA]
¢þ
>WENV182835390
OKFN01000015
[OKFN] human gut metagenome; human gut
57115
57041
-
Arg
TCT
[ENA]
¢þ
>WENV182835848
OKFR01001913
[OKFR] human gut metagenome; human gut
320
246
-
Arg
TCT
[ENA]
¢þ
>WENV183083775
OLJD01003674
[OLJD] human gut metagenome; human gut
749
823
+
Arg
TCT
[ENA]
¢þ
>WENV183090738
OLKE01000512
[OLKE] metagenome; surface
123
49
-
Arg
TCT
[ENA]
¢þ
>C181108789
CP024931
Actinomycetota
Corynebacterium striatum 215 [CP024931]
2927519
2927445
-
Arg
TCT
-
¡û
>C181108826
CP024932
Actinomycetota
Corynebacterium striatum 216 [CP024932]
1466761
1466835
+
Arg
TCT
-
¡û
>C181214840
LS483460
Actinomycetota
Corynebacterium minutissimum NCTC10288 [LS483460]
567990
567916
-
Arg
TCT
-
¡û
>C191207671
LR134339
Actinomycetota
Corynebacterium minutissimum NCTC10285 [LR134339]
2363424
2363498
+
Arg
TCT
-
¡û
>C191210953
LR134408
Actinomycetota
Corynebacterium segmentosum NCTC934 [LR134408]
1881924
1881999
+
Arg
TCT
-
¡û
>W09122409
ACGD01000043
Actinomycetota
Corynebacterium accolens ATCC 49725 [ACGD]
58088
58012
-
Arg
TCT
[ENA]
¡û
>W09122425
ACGE01000005
Actinomycetota
Corynebacterium striatum ATCC 6940 [ACGE]
13186
13260
+
Arg
TCT
[ENA]
¡û
>W1910180458
BJLD01000004
Actinomycetota
Corynebacterium striatum NBRC 15291 [BJLD]
27304
27230
-
Arg
TCT
[ENA]
¡û
>W1910182633
BJNB01000015
Actinomycetota
Corynebacterium flavescens NBRC 14136 [BJNB]
16656
16578
-
Arg
TCT
[ENA]
¡û
>W1910598635
LBCN01000001
Actinomycetota
Corynebacterium striatum 2023 [LBCN]
171174
171248
+
Arg
TCT
[ENA]
¡û
>W1910640610
LTBE01000040
Actinomycetota
Corynebacterium striatum 2023 [LTBE]
11870
11944
+
Arg
TCT
[ENA]
¡û
>W1910640646
LTBF01000014
Actinomycetota
Corynebacterium striatum 2230 [LTBF]
74595
74521
-
Arg
TCT
[ENA]
¡û
>W1910640673
LTBG01000001
Actinomycetota
Corynebacterium striatum 2245 [LTBG]
77462
77388
-
Arg
TCT
[ENA]
¡û
>W1910640712
LTBH01000004
Actinomycetota
Corynebacterium striatum 2247 [LTBH]
79659
79585
-
Arg
TCT
[ENA]
¡û
>W1911204345
NRIL01000009
Actinomycetota
Corynebacterium striatum 2130 [NRIL]
147235
147161
-
Arg
TCT
[ENA]
¡û
>W1911204425
NRIM01000016
Actinomycetota
Corynebacterium striatum 2237 [NRIM]
219125
219051
-
Arg
TCT
[ENA]
¡û
>W1911204476
NRIN01000007
Actinomycetota
Corynebacterium striatum 2296 [NRIN]
74072
73998
-
Arg
TCT
[ENA]
¡û
>W1911204534
NRIO01000009
Actinomycetota
Corynebacterium striatum 2308 [NRIO]
73944
73870
-
Arg
TCT
[ENA]
¡û
>W1911204603
NRIP01000007
Actinomycetota
Corynebacterium striatum 2425 [NRIP]
74072
73998
-
Arg
TCT
[ENA]
¡û
>W1911390880
NWBP01000023
Actinomycetota
Corynebacterium accolens AH4003 [NWBP]
64186
64111
-
Arg
TCT
[ENA]
¡û
>C151073123
CP010827
Actinomycetota
Corynebacterium singulare IBS B52218 [CP010827]
2237067
2237141
+
Arg
TCT
[Ensembl]
¡û
>W10127216
AEED01000130
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
6157
6233
+
Arg
TCT
[ENA]
¡û
>W1510562534
CTEG01000002
Actinomycetota
Corynebacterium striatum BM4687 [CTEG]
13604
13678
+
Arg
TCT
[ENA]
¡û
>W1511365564
JSEF01000016
Actinomycetota
Corynebacterium minutissimum ATCC 23348 [JSEF]
210448
210522
+
Arg
TCT
[ENA]
¡û
>W1511438057
JULV01000066
Actinomycetota
Corynebacterium striatum 963_CAUR [JULV]
11898
11972
+
Arg
TCT
[ENA]
¡û
>W1511438104
JULW01000050
Actinomycetota
Corynebacterium striatum 962_CAUR [JULW]
11901
11975
+
Arg
TCT
[ENA]
¡û
>W1511443084
JUSN01000095
Actinomycetota
Corynebacterium striatum 797_CAUR [JUSN]
74241
74167
-
Arg
TCT
[ENA]
¡û
>W1511449457
JVBA01000119
Actinomycetota
Corynebacterium striatum 587_CAUR [JVBA]
64873
64799
-
Arg
TCT
[ENA]
¡û
>W1511451267
JVCW01000028
Actinomycetota
Corynebacterium striatum 542_CAUR [JVCW]
12274
12348
+
Arg
TCT
[ENA]
¡û
>W1511467857
JVTL01000060
Actinomycetota
Corynebacterium striatum 1329_CAUR [JVTL]
12033
12107
+
Arg
TCT
[ENA]
¡û
>W1511467945
JVTN01000072
Actinomycetota
Corynebacterium striatum 1327_CAUR [JVTN]
74112
74038
-
Arg
TCT
[ENA]
¡û
>W1511471105
JVXO01000047
Actinomycetota
Corynebacterium aurimucosum 1237_CAUR [JVXO]
166707
166783
+
Arg
TCT
[ENA]
¡û
>W11134704
AEED01000130
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
6157
6233
+
Arg
TCT
[ENA]
¡û
>W1511585560
LAYR01000003
Actinomycetota
Corynebacterium striatum 1961 [LAYR]
277118
277192
+
Arg
TCT
[ENA]
¡û
>C161074798
CP014634
Actinomycetota
Corynebacterium simulans PES1 [CP014634]
2042201
2042125
-
Arg
TCT
[Ensembl]
¡û
>C161074848
CP014635
Actinomycetota
Corynebacterium simulans Wattiau [CP014635]
2079656
2079580
-
Arg
TCT
-
¡û
>W1610068136
BCRC01000003
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
74986
74912
-
Arg
TCT
[ENA]
¡û
>W1710065509
BCRC01000003
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
74986
74912
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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