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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147914 (32 seq.)
>W1711361092
MDKE01000069
Gammaproteobacteria
Oceanisphaera psychrotolerans [MDKE]
36034
35958
-
Val
GAC
[ENA]
¡û
>W1711486039
MKEK01000001
Gammaproteobacteria
Rheinheimera salexigens KH87 [MKEK]
2392143
2392219
+
Val
GAC
[ENA]
¡û
>C171118316
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
727401
727325
-
Val
GAC
-
¡û
>C171118317
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
727301
727225
-
Val
GAC
-
¡û
>C171118327
CP021377
Gammaproteobacteria
Oceanisphaera profunda SM1222 [CP021377]
36260
36336
+
Val
GAC
-
¡û
>C171118328
CP021377
Gammaproteobacteria
Oceanisphaera profunda SM1222 [CP021377]
36387
36463
+
Val
GAC
-
¡û
>W131180111
ARMW01000026
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
31438
31514
+
Val
GAC
[ENA]
¡û
>W131180638
ARNG01000084
Gammaproteobacteria
Arsukibacterium perlucidum DSM 18276 [ARNG]
8765
8841
+
Val
GAC
[ENA]
¡û
>W131225058
AUDG01000064
Gammaproteobacteria
Rheinheimera baltica DSM 14885 [AUDG]
12541
12617
+
Val
GAC
[ENA]
¡û
>WENV170315550
CESO01133907
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
77239
77315
+
Val
GAC
[ENA]
¢þ
>WENV170935690
MDTG01261594
[MDTG] marine metagenome; seawater
84541
84465
-
Val
GAC
[ENA]
¢þ
>C181012422
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
2008436
2008512
+
Val
GAC
-
¡û
>W1910784519
MPZM01000003
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
59689
59765
+
Val
GAC
[ENA]
¡û
>W1910784520
MPZM01000003
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
59826
59902
+
Val
GAC
[ENA]
¡û
>W1910784521
MPZM01000003
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
59963
60039
+
Val
GAC
[ENA]
¡û
>W1910852582
NBIM01000001
Gammaproteobacteria
Oceanimonas doudoroffii ATCC 27123 [NBIM]
687749
687825
+
Val
GAC
[ENA]
¡û
>W1911075364
NMUO01000004
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
55911
55835
-
Val
GAC
[ENA]
¡û
>W1911174167
NQJF01000008
Gammaproteobacteria
Oceanimonas baumannii ATCC 700832 [NQJF]
35005
35081
+
Val
GAC
[ENA]
¡û
>W1911492719
OBEB01000003
Gammaproteobacteria
Arsukibacterium tuosuense CGMCC 1.12461 [OBEB]
179309
179385
+
Val
GAC
[ENA]
¡û
>W1810390096
PXYG01000001
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
777712
777788
+
Val
GAC
[ENA]
¡û
>W1810390097
PXYG01000001
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
777827
777903
+
Val
GAC
[ENA]
¡û
>W1810390187
PXYH01000002
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
83130
83054
-
Val
GAC
[ENA]
¡û
>W1810471889
QAGM01000020
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
36589
36513
-
Val
GAC
[ENA]
¡û
>W1810533044
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
1071995
1072071
+
Val
GAC
[ENA]
¡û
>W1810533045
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
1072120
1072196
+
Val
GAC
[ENA]
¡û
>W1810758082
QPID01000001
Gammaproteobacteria
Corallincola holothuriorum C4 [QPID]
261909
261833
-
Val
GAC
[ENA]
¡û
>W1510066220
CDCA01000010
Gammaproteobacteria
Aeromonas tecta CECT 7082 [CDCA]
67593
67517
-
Val
GAC
[ENA]
¡û
>W1511566747
LAHO01000005
Gammaproteobacteria
Arsukibacterium ikkense GCM72 [LAHO]
13666
13590
-
Val
GAC
[ENA]
¡û
>W1511566801
LAHP01000004
Gammaproteobacteria
Arsukibacterium sp. MJ3 [LAHP]
54918
54842
-
Val
GAC
[ENA]
¡û
>W1511573486
LAMX01000021
Gammaproteobacteria
Rheinheimera sp. KL1 [LAMX]
294982
295058
+
Val
GAC
[ENA]
¡û
>W11162881
AFHI01000023
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
206953
207029
+
Val
GAC
[ENA]
¡û
>C121007371
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
2206471
2206395
-
Val
GAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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