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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148029 (75 seq.)
>W1710855710
LLYZ01000004
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
86545
86621
+
His
GTG
[ENA]
¡û
>W1710857481
LMAH01000007
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
62917
62841
-
His
GTG
[ENA]
¡û
>W1710857497
LMAI01000003
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
389541
389465
-
His
GTG
[ENA]
¡û
>W1710877658
LMQH01000004
Bacteroidota
Chryseobacterium sp. Leaf394 [LMQH]
221487
221411
-
His
GTG
[ENA]
¡û
>W1710877903
LMQM01000016
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
55497
55573
+
His
GTG
[ENA]
¡û
>W1710877921
LMQN01000005
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
4349
4274
-
His
GTG
[ENA]
¡û
>W1711072015
LSHB01000056
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
218328
218252
-
His
GTG
[ENA]
¡û
>W131220946
AUAA01000003
Bacteroidota
Epilithonimonas tenax DSM 16811 [AUAA]
112203
112127
-
His
GTG
[ENA]
¡û
>W131227767
AUFK01000017
Bacteroidota
Epilithonimonas caeni DSM 17710 [AUFK]
118205
118130
-
His
GTG
[ENA]
¡û
>W131235279
AULL01000012
Bacteroidota
Kaistella palustris DSM 21579 [AULL]
229010
229085
+
His
GTG
[ENA]
¡û
>W1712082004
NHOS01000001
Bacteroidota
Flavobacteriaceae bacterium JJC [NHOS]
1025524
1025449
-
His
GTG
[ENA]
¡û
>W131181236
ARNT01000019
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
92515
92439
-
His
GTG
[ENA]
¡û
>W131181237
ARNT01000019
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
92397
92323
-
His
GTG
[ENA]
¡û
>WENV180285937
OBID01833277
[OBID] metagenome; sludge
84
159
+
His
GTG
[ENA]
¢þ
>WENV180359404
OBNR01073234
[OBNR] marine metagenome; Seawater_00002010_00002149
237
162
-
His
GTG
[ENA]
¢þ
>WENV180370652
OBOH01161160
[OBOH] marine metagenome; ENVO:00002010
307
233
-
His
GTG
[ENA]
¢þ
>WENV181203185
OERT01011962
[OERT] metagenome; water of meat washing
283
208
-
His
GTG
[ENA]
¢þ
>W141291527
JASZ01000011
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
15613
15688
+
His
GTG
[ENA]
¡û
>WENV170559908
CXWL01173209
[CXWL] groundwater metagenome; biofilm material
1152
1228
+
His
GTG
[ENA]
¢þ
>C191099920
CP033070
Bacteroidota
Chryseobacterium sp. 3008163 [CP033070]
2988011
2988087
+
His
GTG
-
¡û
>C191115372
CP033917
Bacteroidota
Chryseobacterium sp. G0201 [CP033917]
963737
963662
-
His
GTG
-
¡û
>C191116079
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
3190520
3190595
+
His
GTG
-
¡û
>C191116143
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
4096763
4096688
-
His
GTG
-
¡û
>C191116451
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
1069826
1069901
+
His
GTG
-
¡û
>C191116534
CP033934
Bacteroidota
Chryseobacterium balustinum KC_1863 [CP033934]
4775321
4775396
+
His
GTG
-
¡û
>C191120457
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
2517246
2517321
+
His
GTG
-
¡û
>C191156078
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
731452
731377
-
His
GTG
-
¡û
>W141806171
JPLY01000004
Bacteroidota
Epilithonimonas lactis [JPLY]
97462
97538
+
His
GTG
[ENA]
¡û
>W141806228
JPLZ01000007
Bacteroidota
Chryseobacterium sp. FH1 FH1 [JPLZ]
126971
127046
+
His
GTG
[ENA]
¡û
>W141809515
JPRO01000002
Bacteroidota
Chryseobacterium luteum [JPRO]
60212
60287
+
His
GTG
[ENA]
¡û
>W141816653
JQKA01000012
Bacteroidota
Chryseobacterium sp. OV259 [JQKA]
31932
31856
-
His
GTG
[ENA]
¡û
>C09106197
CP001673
Bacteroidota
Flavobacteriaceae bacterium 3519-10 [CP001673]
199525
199601
+
His
GTG
[Ensembl]
¡û
>W1910808702
MUGO01000016
Bacteroidota
Chryseobacterium piscicola DSM 21068 [MUGO]
96439
96514
+
His
GTG
[ENA]
¡û
>W1910933650
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
603761
603686
-
His
GTG
[ENA]
¡û
>W1911701316
QNUG01000006
Bacteroidota
Epilithonimonas hispanica KCTC 22104 [QNUG]
64171
64246
+
His
GTG
[ENA]
¡û
>W1911701740
QNVS01000061
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
6679
6754
+
His
GTG
[ENA]
¡û
>W1911701995
QNVW01000004
Bacteroidota
Chryseobacterium sp. 5_R23647 [QNVW]
107489
107564
+
His
GTG
[ENA]
¡û
>W1911708513
QOVY01000003
Bacteroidota
Chryseobacterium sp. SC28 [QOVY]
52071
52146
+
His
GTG
[ENA]
¡û
>W1810193887
PKNN01000010
Bacteroidota
Chryseobacterium scophthalmum VV8 [PKNN]
38240
38164
-
His
GTG
[ENA]
¡û
>W1511391181
JSYQ01000027
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
38312
38388
+
His
GTG
[ENA]
¡û
>W1511391182
JSYQ01000027
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
38430
38505
+
His
GTG
[ENA]
¡û
>W1511432303
JUGK01000014
Bacteroidota
Chryseobacterium sp. YR005 [JUGK]
373200
373124
-
His
GTG
[ENA]
¡û
>W1511699480
LGIP01000002
Bacteroidota
Chryseobacterium sp. Hurlbut01 [LGIP]
332833
332757
-
His
GTG
[ENA]
¡û
>C161084433
CP015199
Bacteroidota
Chryseobacterium glaciei IHBB 10212 [CP015199]
2607664
2607739
+
His
GTG
[Ensembl]
¡û
>W1610095098
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
195074
195149
+
His
GTG
[ENA]
¡û
>W1610596845
LELA01000092
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
38321
38245
-
His
GTG
[ENA]
¡û
>W1610597188
LFEG01000003
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
23883
23807
-
His
GTG
[ENA]
¡û
>W1610634208
LIRF01000007
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
134666
134741
+
His
GTG
[ENA]
¡û
>W1610718091
LLYZ01000004
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
86545
86621
+
His
GTG
[ENA]
¡û
>W1610719862
LMAH01000007
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
62917
62841
-
His
GTG
[ENA]
¡û
>W1610719878
LMAI01000003
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
389541
389465
-
His
GTG
[ENA]
¡û
>W1610740004
LMQH01000004
Bacteroidota
Chryseobacterium sp. Leaf394 [LMQH]
221487
221411
-
His
GTG
[ENA]
¡û
>W1610740249
LMQM01000016
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
55497
55573
+
His
GTG
[ENA]
¡û
>W1610740267
LMQN01000005
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
4349
4274
-
His
GTG
[ENA]
¡û
>W1610911275
LSHB01000056
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
218328
218252
-
His
GTG
[ENA]
¡û
>W1710097893
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
195074
195149
+
His
GTG
[ENA]
¡û
>W1710514905
FNBH01000005
Bacteroidota
Epilithonimonas hungarica hungaricum [FNBH]
131746
131670
-
His
GTG
[ENA]
¡û
>W1710526631
FNKL01000003
Bacteroidota
Chryseobacterium soldanellicola [FNKL]
913734
913659
-
His
GTG
[ENA]
¡û
>W1710550482
FOFI01000001
Bacteroidota
Epilithonimonas lactis [FOFI]
140966
141042
+
His
GTG
[ENA]
¡û
>W1710570217
FOUZ01000008
Bacteroidota
Algoriella xinjiangensis [FOUZ]
60200
60124
-
His
GTG
[ENA]
¡û
>W1710570218
FOUZ01000008
Bacteroidota
Algoriella xinjiangensis [FOUZ]
60082
60007
-
His
GTG
[ENA]
¡û
>W1710570219
FOUZ01000008
Bacteroidota
Algoriella xinjiangensis [FOUZ]
59965
59891
-
His
GTG
[ENA]
¡û
>W1710582256
FPKW01000012
Bacteroidota
Chryseobacterium limigenitum [FPKW]
125712
125787
+
His
GTG
[ENA]
¡û
>W1710590241
FRAV01000019
Bacteroidota
Chryseobacterium polytrichastri [FRAV]
97408
97483
+
His
GTG
[ENA]
¡û
>W1710590764
FRBH01000004
Bacteroidota
Chishuiella changwenlii [FRBH]
2805
2881
+
His
GTG
[ENA]
¡û
>W1710590765
FRBH01000004
Bacteroidota
Chishuiella changwenlii [FRBH]
2925
3001
+
His
GTG
[ENA]
¡û
>W1710590766
FRBH01000004
Bacteroidota
Chishuiella changwenlii [FRBH]
3045
3120
+
His
GTG
[ENA]
¡û
>W1710594738
FSRK01000003
Bacteroidota
Epilithonimonas zeae [FSRK]
429026
428951
-
His
GTG
[ENA]
¡û
>W1710595012
FSRQ01000005
Bacteroidota
Chryseobacterium scophthalmum [FSRQ]
177305
177230
-
His
GTG
[ENA]
¡û
>W1710595878
FTMF01000005
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
164895
164820
-
His
GTG
[ENA]
¡û
>W1710598967
FTOJ01000007
Bacteroidota
Chryseobacterium piscicola [FTOJ]
101398
101322
-
His
GTG
[ENA]
¡û
>W1710603589
FUZE01000010
Bacteroidota
Chryseobacterium balustinum [FUZE]
45800
45724
-
His
GTG
[ENA]
¡û
>W1710717850
LELA01000092
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
38321
38245
-
His
GTG
[ENA]
¡û
>W1710718512
LFEG01000003
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
23883
23807
-
His
GTG
[ENA]
¡û
>W1710768585
LIRF01000007
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
134666
134741
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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