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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148097 (6 seq.)
>W1710799490
LJUT01000177
Planctomycetota
Planctomycetes bacterium SM23_65 [LJUT]
1627
1550
-
Arg
CCG
[ENA]
¡û
>WENV180022493
FTGH01000373
[FTGH] metagenome; soil
2437
2360
-
Arg
CCG
[ENA]
¡û
>WENV180295781
OBIZ01319392
[OBIZ] soil metagenome; soil
132
55
-
Arg
CCG
[ENA]
¡û
>WENV180351642
OBLQ010081416
[OBLQ] soil metagenome; soil
1004
1081
+
Arg
CCG
[ENA]
¡û
>WENV170661907
JXWV01148813
[JXWV] soil metagenome; rice field; organic FYM Plot
83
6
-
Arg
CCG
[ENA]
¡û
>W1610663447
LJUT01000177
Planctomycetota
Planctomycetes bacterium SM23_65 [LJUT]
1627
1550
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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