This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148134 (51 seq.)
>W1711224091
LXTT01000101
Bacteroidota
Muricauda sp. CP2A [LXTT]
5109
5185
+
Ala
GGC
[ENA]
¡û
>W1711385744
MEEN01000051
Bacteroidota
Niastella sp. SCN 39-18 [MEEN]
2679
2603
-
Ala
GGC
[ENA]
¡û
>W1711503788
MKTX01000017
Bacteroidota
Sphingobacteriales bacterium 39-19 [MKTX]
50167
50243
+
Ala
GGC
[ENA]
¡û
>W1711503821
MKTY01000024
Bacteroidota
Sphingobacteriales bacterium 46-32 [MKTY]
258488
258562
+
Ala
GGC
[ENA]
¡û
>C171030752
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
2849539
2849465
-
Ala
GGC
-
¡û
>W131219013
ATYE01000011
Bacteroidota
Asinibacterium sp. OR43 OR43 [ATYE]
102464
102538
+
Ala
GGC
[ENA]
¡û
>WENV180118465
OASD01000004
[OASD] human gut metagenome; ENVO:feces
68381
68307
-
Ala
GGC
[ENA]
¢þ
>WENV180346570
OBLN01159698
[OBLN] sediment metagenome; sediment
176
252
+
Ala
GGC
[ENA]
¢þ
>WENV180397129
OBPX01011366
[OBPX] marine metagenome; vv
220
294
+
Ala
GGC
[ENA]
¢þ
>WENV180596976
OCPK01000100
[OCPK] human gut metagenome; ENVO:feces
11819
11893
+
Ala
GGC
[ENA]
¢þ
>WENV180635815
OCRE01011326
[OCRE] marine metagenome; Seawater
518
592
+
Ala
GGC
[ENA]
¢þ
>WENV180636273
OCRE01111353
[OCRE] marine metagenome; Seawater
204
278
+
Ala
GGC
[ENA]
¢þ
>WENV181168154
OEIU01182175
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
409
483
+
Ala
GGC
[ENA]
¢þ
>W141220195
AZXP01000001
Bacteroidota
Asinibacterium sp. OR53 OR53 [AZXP]
1995063
1994989
-
Ala
GGC
[ENA]
¡û
>WENV182446182
OIKZ01003615
[OIKZ] human gut metagenome; human gut
2137
2063
-
Ala
GGC
[ENA]
¢þ
>WENV182459308
OINK01012320
[OINK] human gut metagenome; human gut
259
333
+
Ala
GGC
[ENA]
¢þ
>WENV183391350
OLZD01001142
[OLZD] human gut metagenome; feces
4152
4226
+
Ala
GGC
[ENA]
¢þ
>WENV183414931
OMAQ01000571
[OMAQ] human gut metagenome; feces
12861
12935
+
Ala
GGC
[ENA]
¢þ
>WENV183477181
OMFC01000210
[OMFC] human gut metagenome; feces
17143
17069
-
Ala
GGC
[ENA]
¢þ
>WENV183479833
OMFI01000558
[OMFI] human gut metagenome; feces
4608
4534
-
Ala
GGC
[ENA]
¢þ
>WENV183627833
OOGL01056925
[OOGL] marine metagenome; sea ice
58
132
+
Ala
GGC
[ENA]
¢þ
>WENV170400395
CEUE01104463
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2198
2272
+
Ala
GGC
[ENA]
¢þ
>WENV170656014
JTFN01115658
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
176
252
+
Ala
GGC
[ENA]
¢þ
>WENV170882249
MDTC01146138
[MDTC] marine metagenome; seawater
59738
59812
+
Ala
GGC
[ENA]
¢þ
>WENV170962566
MRWF01020548
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
12994
12918
-
Ala
GGC
[ENA]
¢þ
>WENV170963174
MRWG01000026
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
325707
325631
-
Ala
GGC
[ENA]
¢þ
>WENV170988441
MWVX01496957
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
274
198
-
Ala
GGC
[ENA]
¢þ
>WENV170994645
MWWE01021479
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
653
727
+
Ala
GGC
[ENA]
¢þ
>C181090206
CP023777
Bacteroidota
Chitinophaga caeni 13 [CP023777]
1920432
1920506
+
Ala
GGC
-
¡û
>C181193433
CP030850
Bacteroidota
Runella rosea HYN0085 [CP030850]
6748282
6748208
-
Ala
GGC
-
¡û
>C181225975
LT906468
Bacteroidota
Sphingobacterium mizutaii NCTC12149 [LT906468]
3297688
3297762
+
Ala
GGC
-
¡û
>C191090790
CP032489
Bacteroidota
Arachidicoccus soli KIS59-12 [CP032489]
2703762
2703836
+
Ala
GGC
-
¡û
>W141821178
JQNJ01000001
Bacteroidota
Muricauda sp. MAR_2010_75 [JQNJ]
1279230
1279154
-
Ala
GGC
[ENA]
¡û
>W1911136206
NOUX01000002
Bacteroidota
Sphingobacterium cellulitidis R-53603 [NOUX]
315484
315558
+
Ala
GGC
[ENA]
¡û
>W1911136245
NOUY01000001
Bacteroidota
Sphingobacterium cellulitidis R-53745 [NOUY]
297680
297606
-
Ala
GGC
[ENA]
¡û
>W1911701536
QNUL01000034
Bacteroidota
Dyadobacter luteus RS19 [QNUL]
59439
59513
+
Ala
GGC
[ENA]
¡û
>W1911767839
QXFI01000026
Bacteroidota
Allomuricauda maritima 72 [QXFI]
72456
72530
+
Ala
GGC
[ENA]
¡û
>W1911767880
QXFJ01000028
Bacteroidota
Allomuricauda aequoris NH166 [QXFJ]
73164
73238
+
Ala
GGC
[ENA]
¡û
>W1911768092
QXFO01000008
Bacteroidota
Allomuricauda taeanensis JCM 17757 [QXFO]
240110
240186
+
Ala
GGC
[ENA]
¡û
>W1810351414
PVEQ01000014
Bacteroidota
Sediminibacterium magnilacihabitans DSM 22423 [PVEQ]
1231
1157
-
Ala
GGC
[ENA]
¡û
>W1810514327
QBUK01000001
Bacteroidota
Allomuricauda amoyensis GCL-11 [QBUK]
83149
83225
+
Ala
GGC
[ENA]
¡û
>W1810758677
QPIW01000001
Bacteroidota
Runella aurantiaca YX9 [QPIW]
539219
539142
-
Ala
GGC
[ENA]
¡û
>C11118881
CP002859
Bacteroidota
Runella slithyformis DSM 19594 [CP002859]
4608834
4608910
+
Ala
GGC
[Ensembl]
¡û
>C161104966
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
2155322
2155398
+
Ala
GGC
[Ensembl]
¡û
>W1611008462
LXTT01000101
Bacteroidota
Muricauda sp. CP2A [LXTT]
5109
5185
+
Ala
GGC
[ENA]
¡û
>W1710521454
FNGK01000002
Bacteroidota
Sphingobacterium mizutaii [FNGK]
228454
228528
+
Ala
GGC
[ENA]
¡û
>W1710528853
FNNO01000001
Bacteroidota
Hydrobacter penzbergensis [FNNO]
607931
607855
-
Ala
GGC
[ENA]
¡û
>W1710538710
FNUT01000012
Bacteroidota
Sphingobacterium lactis [FNUT]
66016
65942
-
Ala
GGC
[ENA]
¡û
>W1710557228
FOKU01000001
Bacteroidota
Allomuricauda taeanensis antarctica [FOKU]
465703
465627
-
Ala
GGC
[ENA]
¡û
>W1710590136
FRAT01000001
Bacteroidota
Allomuricauda taeanensis antarctica [FRAT]
465703
465627
-
Ala
GGC
[ENA]
¡û
>W1710600252
FUWH01000002
Bacteroidota
Sediminibacterium ginsengisoli [FUWH]
134132
134058
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK