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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148137 (29 seq.)
>W1710809734
LKEU01000010
Bacillota
Acetobacterium wieringae [LKEU]
47891
47815
-
Met
CAT
[ENA]
¡û
>W1711434419
MIMZ01000012
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
83179
83255
+
Met
CAT
[ENA]
¡û
>C171101771
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
1630777
1630853
+
Met
CAT
-
¡û
>WENV180176394
OAWD01000081
[OAWD] human gut metagenome; faeces
24738
24814
+
Met
CAT
[ENA]
¢þ
>WENV180498290
OCAG01000047
[OCAG] human gut metagenome; faeces
41665
41741
+
Met
CAT
[ENA]
¢þ
>WENV180679602
OCVV012315357
[OCVV] gut metagenome; gut
185
109
-
Met
CAT
[ENA]
¢þ
>WENV180679605
OCVV012315357
[OCVV] gut metagenome; gut
185
109
-
Met
CAT
[ENA]
¢þ
>W141150076
AXAC01000019
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
56033
56109
+
Met
CAT
[ENA]
¡û
>WENV181865729
OGWU01082626
[OGWU] human gut metagenome; faeces
350
426
+
Met
CAT
[ENA]
¢þ
>WENV182403343
OIET01003096
[OIET] human gut metagenome; human gut
2215
2291
+
Met
CAT
[ENA]
¢þ
>WENV182405379
OIEV01003662
[OIEV] human gut metagenome; human gut
2516
2592
+
Met
CAT
[ENA]
¢þ
>WENV170692440
LGOV01007583
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
26902
26978
+
Met
CAT
[ENA]
¢þ
>WENV170699880
LGVF01677748
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
32
108
+
Met
CAT
[ENA]
¢þ
>WENV170967396
MTKW01001223
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
14048
13972
-
Met
CAT
[ENA]
¢þ
>WENV170968159
MTKW01006844
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
44133
44209
+
Met
CAT
[ENA]
¢þ
>C191064445
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
1902137
1902061
-
Met
CAT
-
¡û
>C191219528
LR215983
Bacillota
Eubacterium limosum [LR215983]
3151329
3151253
-
Met
CAT
-
¡û
>W1810609762
QGUD01000010
Bacillota
Eubacterium limosum 8486cho [QGUD]
70841
70765
-
Met
CAT
[ENA]
¡û
>W1810871743
QUDF01000012
Bacillota
Eubacterium sp. AM05-23 [QUDF]
83726
83802
+
Met
CAT
[ENA]
¡û
>C11108832
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
3491121
3491045
-
Met
CAT
[Ensembl]
¡û
>W1511480159
JWIS01000010
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
621514
621438
-
Met
CAT
[ENA]
¡û
>W11144151
AEQN01000016
Bacillota
Pseudoramibacter alactolyticus ATCC 23263 [AEQN]
219526
219450
-
Met
CAT
[ENA]
¡û
>C121003903
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
3443481
3443405
-
Met
CAT
[Ensembl]
¡û
>C161037781
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
824896
824972
+
Met
CAT
[Ensembl]
¡û
>W1710525037
FNJF01000009
Bacillota
Eubacterium maltosivorans limosum [FNJF]
60001
60077
+
Met
CAT
[ENA]
¡û
>W1710530527
FNOU01000016
Bacillota
Eubacterium barkeri [FNOU]
39867
39943
+
Met
CAT
[ENA]
¡û
>W1710533815
FNRK01000021
Bacillota
Eubacterium aggregans [FNRK]
13904
13828
-
Met
CAT
[ENA]
¡û
>W1710571967
FOWI01000005
Bacillota
Eubacterium callanderi [FOWI]
53304
53380
+
Met
CAT
[ENA]
¡û
>W1710591267
FRBP01000001
Bacillota
Eubacterium callanderi [FRBP]
367974
367898
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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