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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148138 (20 seq.)
>W1711434422
MIMZ01000012
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
271228
271304
+
Arg
CCT
[ENA]
¡û
>C171101774
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
1840931
1841007
+
Arg
CCT
-
¡û
>WENV180149235
OAUK01036208
[OAUK] human gut metagenome; faeces
355
279
-
Arg
CCT
[ENA]
¢þ
>WENV180176631
OAWD01000416
[OAWD] human gut metagenome; faeces
427
351
-
Arg
CCT
[ENA]
¢þ
>WENV180498450
OCAG01000204
[OCAG] human gut metagenome; faeces
40715
40791
+
Arg
CCT
[ENA]
¢þ
>WENV180504154
OCAN01000641
[OCAN] human gut metagenome; faeces
26918
26994
+
Arg
CCT
[ENA]
¢þ
>WENV181346083
OFML01003733
[OFML] human gut metagenome; human gut
477
553
+
Arg
CCT
[ENA]
¢þ
>WENV182403114
OIET01000812
[OIET] human gut metagenome; human gut
18940
18864
-
Arg
CCT
[ENA]
¢þ
>WENV182405490
OIEV01006169
[OIEV] human gut metagenome; human gut
282
206
-
Arg
CCT
[ENA]
¢þ
>WENV182892151
OKSH01022511
[OKSH] human gut metagenome; faeces
1084
1008
-
Arg
CCT
[ENA]
¢þ
>C191064429
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
4027178
4027254
+
Arg
CCT
-
¡û
>C191219531
LR215983
Bacillota
Eubacterium limosum [LR215983]
2941497
2941421
-
Arg
CCT
-
¡û
>W1810609739
QGUD01000002
Bacillota
Eubacterium limosum 8486cho [QGUD]
399583
399507
-
Arg
CCT
[ENA]
¡û
>W1810871711
QUDF01000002
Bacillota
Eubacterium sp. AM05-23 [QUDF]
222887
222963
+
Arg
CCT
[ENA]
¡û
>C11108835
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
3303071
3302995
-
Arg
CCT
[Ensembl]
¡û
>W1511480162
JWIS01000010
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
411360
411284
-
Arg
CCT
[ENA]
¡û
>C161037816
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3036916
3036840
-
Arg
CCT
[Ensembl]
¡û
>W1710525027
FNJF01000003
Bacillota
Eubacterium maltosivorans limosum [FNJF]
220046
220122
+
Arg
CCT
[ENA]
¡û
>W1710571970
FOWI01000005
Bacillota
Eubacterium callanderi [FOWI]
241534
241610
+
Arg
CCT
[ENA]
¡û
>W1710591270
FRBP01000001
Bacillota
Eubacterium callanderi [FRBP]
143511
143435
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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