This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148139 (33 seq.)
>W1711434389
MIMZ01000004
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
61571
61647
+
Pro
GGG
[ENA]
¡û
>C171101775
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2140143
2140219
+
Pro
GGG
-
¡û
>WENV180149285
OAUK01056986
[OAUK] human gut metagenome; faeces
22
98
+
Pro
GGG
[ENA]
¢þ
>WENV180176384
OAWD01000076
[OAWD] human gut metagenome; faeces
100002
100078
+
Pro
GGG
[ENA]
¢þ
>WENV180346391
OBLN01084064
[OBLN] sediment metagenome; sediment
391
467
+
Pro
GGG
[ENA]
¢þ
>WENV180498349
OCAG01000083
[OCAG] human gut metagenome; faeces
96738
96662
-
Pro
GGG
[ENA]
¢þ
>WENV180504250
OCAN01001015
[OCAN] human gut metagenome; faeces
2747
2671
-
Pro
GGG
[ENA]
¢þ
>WENV180651997
OCVV010002753
[OCVV] gut metagenome; gut
4
80
+
Pro
GGG
[ENA]
¢þ
>WENV180651998
OCVV010002753
[OCVV] gut metagenome; gut
4
80
+
Pro
GGG
[ENA]
¢þ
>WENV180677641
OCVV011753168
[OCVV] gut metagenome; gut
151
227
+
Pro
GGG
[ENA]
¢þ
>WENV180677642
OCVV011753168
[OCVV] gut metagenome; gut
151
227
+
Pro
GGG
[ENA]
¢þ
>WENV180678409
OCVV011972021
[OCVV] gut metagenome; gut
86
10
-
Pro
GGG
[ENA]
¢þ
>WENV180678410
OCVV011972021
[OCVV] gut metagenome; gut
86
10
-
Pro
GGG
[ENA]
¢þ
>WENV181346010
OFML01002710
[OFML] human gut metagenome; human gut
3581
3657
+
Pro
GGG
[ENA]
¢þ
>WENV182403044
OIET01000564
[OIET] human gut metagenome; human gut
22749
22673
-
Pro
GGG
[ENA]
¢þ
>WENV170967399
MTKW01001225
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
7604
7680
+
Pro
GGG
[ENA]
¢þ
>WENV170968386
MTKW01008674
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
23241
23317
+
Pro
GGG
[ENA]
¢þ
>C191064451
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
1378043
1377967
-
Pro
GGG
-
¡û
>C191219533
LR215983
Bacillota
Eubacterium limosum [LR215983]
2584807
2584731
-
Pro
GGG
-
¡û
>W1810609740
QGUD01000002
Bacillota
Eubacterium limosum 8486cho [QGUD]
102029
101953
-
Pro
GGG
[ENA]
¡û
>W1810721096
QNRS01000016
Bacillota
Garciella nitratireducens GHB3 [QNRS]
16601
16525
-
Pro
GGG
[ENA]
¡û
>W1810721332
QNRX01000003
Bacillota
Alkalibaculum bacchi DSM 22112 [QNRX]
84989
84913
-
Pro
GGG
[ENA]
¡û
>W1810871714
QUDF01000003
Bacillota
Eubacterium sp. AM05-23 [QUDF]
288561
288637
+
Pro
GGG
[ENA]
¡û
>C11108836
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
3066709
3066633
-
Pro
GGG
[Ensembl]
¡û
>W1511480163
JWIS01000010
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
114025
113949
-
Pro
GGG
[ENA]
¡û
>W11144128
AEQN01000007
Bacillota
Pseudoramibacter alactolyticus ATCC 23263 [AEQN]
98327
98403
+
Pro
GGG
[ENA]
¡û
>C161037786
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
1292239
1292315
+
Pro
GGG
[Ensembl]
¡û
>W1710525031
FNJF01000006
Bacillota
Eubacterium maltosivorans limosum [FNJF]
101579
101655
+
Pro
GGG
[ENA]
¡û
>W1710530515
FNOU01000007
Bacillota
Eubacterium barkeri [FNOU]
91563
91487
-
Pro
GGG
[ENA]
¡û
>W1710533788
FNRK01000002
Bacillota
Eubacterium aggregans [FNRK]
28033
28109
+
Pro
GGG
[ENA]
¡û
>W1710571990
FOWI01000009
Bacillota
Eubacterium callanderi [FOWI]
99920
99996
+
Pro
GGG
[ENA]
¡û
>W1710591272
FRBP01000002
Bacillota
Eubacterium callanderi [FRBP]
270359
270283
-
Pro
GGG
[ENA]
¡û
>W1710600836
FUWV01000001
Bacillota
Garciella nitratireducens DSM 15102 [FUWV]
240843
240767
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK