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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148140 (74 seq.)
>W1710809740
LKEU01000014
Bacillota
Acetobacterium wieringae [LKEU]
359
435
+
Asp
GTC
[ENA]
¡û
>W1710809753
LKEU01000017
Bacillota
Acetobacterium wieringae [LKEU]
78098
78174
+
Asp
GTC
[ENA]
¡û
>W1710931145
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
5827
5903
+
Asp
GTC
[ENA]
¡û
>W1710931172
LOHE01000044
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
21407
21331
-
Asp
GTC
[ENA]
¡û
>W1710931196
LOHE01000110
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
184
260
+
Asp
GTC
[ENA]
¡û
>W1711434391
MIMZ01000004
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
158368
158444
+
Asp
GTC
[ENA]
¡û
>W1711434410
MIMZ01000009
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
368
444
+
Asp
GTC
[ENA]
¡û
>W1711434426
MIMZ01000017
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
286062
285986
-
Asp
GTC
[ENA]
¡û
>W1711622106
MPDV01000120
Bacillota
Clostridioides difficile [MPDV]
347
423
+
Asp
GTC
[ENA]
¡û
>W1711733631
MTWH01000001
Bacillota
Clostridioides difficile [MTWH]
37687
37763
+
Asp
GTC
[ENA]
¡û
>W1711733652
MTWH01000001
Bacillota
Clostridioides difficile [MTWH]
136587
136663
+
Asp
GTC
[ENA]
¡û
>W1711733678
MTWH01000003
Bacillota
Clostridioides difficile [MTWH]
9462
9538
+
Asp
GTC
[ENA]
¡û
>C171101777
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2236907
2236983
+
Asp
GTC
-
¡û
>C171101795
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2677649
2677725
+
Asp
GTC
-
¡û
>C171101808
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
3086955
3087031
+
Asp
GTC
-
¡û
>WENV180176424
OAWD01000106
[OAWD] human gut metagenome; faeces
69
145
+
Asp
GTC
[ENA]
¢þ
>WENV180176878
OAWD01002749
[OAWD] human gut metagenome; faeces
1528
1604
+
Asp
GTC
[ENA]
¢þ
>WENV180363654
OBNY01165423
[OBNY] marine metagenome; ENVO:00002010
34
110
+
Asp
GTC
[ENA]
¢þ
>WENV180498678
OCAG01000876
[OCAG] human gut metagenome; faeces
12950
12874
-
Asp
GTC
[ENA]
¢þ
>WENV180504412
OCAN01002420
[OCAN] human gut metagenome; faeces
6286
6210
-
Asp
GTC
[ENA]
¢þ
>W08007673
ABKJ01000055
Bacillota
Clostridioides difficile ATCC 43255 [ABKJ]
4
80
+
Asp
GTC
[ENA]
¡û
>W141150084
AXAC01000024
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
1375
1299
-
Asp
GTC
[ENA]
¡û
>WENV181896708
OGXS01002045
[OGXS] human gut metagenome; faeces
11035
11111
+
Asp
GTC
[ENA]
¢þ
>WENV182403253
OIET01001922
[OIET] human gut metagenome; human gut
91
167
+
Asp
GTC
[ENA]
¢þ
>WENV182405360
OIEV01003504
[OIEV] human gut metagenome; human gut
367
443
+
Asp
GTC
[ENA]
¢þ
>WENV182405399
OIEV01003973
[OIEV] human gut metagenome; human gut
1179
1103
-
Asp
GTC
[ENA]
¢þ
>W141255274
CBTZ010000195
Bacillota
[Clostridium] dakarense 1 [CBTZ]
20653
20577
-
Asp
GTC
[ENA]
¡û
>WENV182836560
OKFX01005331
[OKFX] human gut metagenome; human gut
107
31
-
Asp
GTC
[ENA]
¢þ
>WENV170657378
JTFO01137594
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
563
487
-
Asp
GTC
[ENA]
¢þ
>WENV170675230
LCWZ01018657
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
560
633
+
Asp
GTC
[ENA]
¢þ
>WENV170692608
LGOV01016271
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
441
365
-
Asp
GTC
[ENA]
¢þ
>WENV170695974
LGVE01193373
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
2021
1945
-
Asp
GTC
[ENA]
¢þ
>WENV170699913
LGVF01680268
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
278
202
-
Asp
GTC
[ENA]
¢þ
>WENV170699916
LGVF01680269
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
288
364
+
Asp
GTC
[ENA]
¢þ
>WENV170721960
LSQX01210885
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
97923
97999
+
Asp
GTC
[ENA]
¢þ
>WENV170968416
MTKW01009056
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1710
1786
+
Asp
GTC
[ENA]
¢þ
>C191064396
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
6792
6868
+
Asp
GTC
-
¡û
>C191064421
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3802502
3802578
+
Asp
GTC
-
¡û
>C191064435
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
4284036
4284112
+
Asp
GTC
-
¡û
>C191219496
LR215983
Bacillota
Eubacterium limosum [LR215983]
293501
293577
+
Asp
GTC
-
¡û
>C191219506
LR215983
Bacillota
Eubacterium limosum [LR215983]
733558
733634
+
Asp
GTC
-
¡û
>C191219535
LR215983
Bacillota
Eubacterium limosum [LR215983]
2481301
2481225
-
Asp
GTC
-
¡û
>W1810609742
QGUD01000002
Bacillota
Eubacterium limosum 8486cho [QGUD]
5265
5189
-
Asp
GTC
[ENA]
¡û
>W1810609752
QGUD01000004
Bacillota
Eubacterium limosum 8486cho [QGUD]
394041
393965
-
Asp
GTC
[ENA]
¡û
>W1810871717
QUDF01000004
Bacillota
Eubacterium sp. AM05-23 [QUDF]
56075
56151
+
Asp
GTC
[ENA]
¡û
>C11108814
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
949168
949244
+
Asp
GTC
[Ensembl]
¡û
>C11108838
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
2969913
2969837
-
Asp
GTC
[Ensembl]
¡û
>C11108847
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
2689136
2689060
-
Asp
GTC
[Ensembl]
¡û
>W1510725090
CXYU01000015
Bacillota
Clostridiales bacterium mt11 [CXYU]
155
231
+
Asp
GTC
[ENA]
¡û
>W1510725114
CXYU01000021
Bacillota
Clostridiales bacterium mt11 [CXYU]
39732
39656
-
Asp
GTC
[ENA]
¡û
>W1511480165
JWIS01000010
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
17261
17185
-
Asp
GTC
[ENA]
¡û
>W1511480188
JWIS01000028
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
92
16
-
Asp
GTC
[ENA]
¡û
>W11144117
AEQN01000005
Bacillota
Pseudoramibacter alactolyticus ATCC 23263 [AEQN]
95795
95871
+
Asp
GTC
[ENA]
¡û
>C121003910
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
3340499
3340423
-
Asp
GTC
[Ensembl]
¡û
>C121003926
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
2822288
2822212
-
Asp
GTC
[Ensembl]
¡û
>C121003934
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
2815553
2815477
-
Asp
GTC
[Ensembl]
¡û
>C161037808
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3248334
3248258
-
Asp
GTC
[Ensembl]
¡û
>C161037822
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
2825146
2825070
-
Asp
GTC
[Ensembl]
¡û
>C161037825
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
2772392
2772316
-
Asp
GTC
[Ensembl]
¡û
>W1610788687
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
5827
5903
+
Asp
GTC
[ENA]
¡û
>W1610788714
LOHE01000044
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
21407
21331
-
Asp
GTC
[ENA]
¡û
>W1610788738
LOHE01000110
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
184
260
+
Asp
GTC
[ENA]
¡û
>W1710136503
FABS01000156
Bacillota
Clostridioides difficile [FABS]
434
358
-
Asp
GTC
[ENA]
¡û
>W1710137044
FACA01000280
Bacillota
Clostridioides difficile [FACA]
1040
964
-
Asp
GTC
[ENA]
¡û
>W1710525060
FNJF01000043
Bacillota
Eubacterium maltosivorans limosum [FNJF]
12452
12376
-
Asp
GTC
[ENA]
¡û
>W1710525066
FNJF01000063
Bacillota
Eubacterium maltosivorans limosum [FNJF]
813
737
-
Asp
GTC
[ENA]
¡û
>W1710530519
FNOU01000013
Bacillota
Eubacterium barkeri [FNOU]
23154
23230
+
Asp
GTC
[ENA]
¡û
>W1710533830
FNRK01000065
Bacillota
Eubacterium aggregans [FNRK]
586
510
-
Asp
GTC
[ENA]
¡û
>W1710571973
FOWI01000006
Bacillota
Eubacterium callanderi [FOWI]
575
651
+
Asp
GTC
[ENA]
¡û
>W1710571985
FOWI01000008
Bacillota
Eubacterium callanderi [FOWI]
575
651
+
Asp
GTC
[ENA]
¡û
>W1710571992
FOWI01000009
Bacillota
Eubacterium callanderi [FOWI]
196725
196801
+
Asp
GTC
[ENA]
¡û
>W1710591274
FRBP01000002
Bacillota
Eubacterium callanderi [FRBP]
173569
173493
-
Asp
GTC
[ENA]
¡û
>W1710591281
FRBP01000004
Bacillota
Eubacterium callanderi [FRBP]
250
326
+
Asp
GTC
[ENA]
¡û
>W1710591307
FRBP01000012
Bacillota
Eubacterium callanderi [FRBP]
172974
172898
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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