This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148141 (31 seq.)
>W1711434432
MIMZ01000017
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
47575
47499
-
Lys
CTT
[ENA]
¡û
>C171101801
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2924359
2924435
+
Lys
CTT
-
¡û
>C171130799
LT700187
Bacillota
Christensenella massiliensis Marseille-P2438 [LT700187]
2527813
2527737
-
Lys
CTT
-
¡û
>WENV180176635
OAWD01000428
[OAWD] human gut metagenome; faeces
3863
3787
-
Lys
CTT
[ENA]
¢þ
>WENV180498443
OCAG01000196
[OCAG] human gut metagenome; faeces
19227
19151
-
Lys
CTT
[ENA]
¢þ
>WENV180504405
OCAN01002352
[OCAN] human gut metagenome; faeces
2943
3019
+
Lys
CTT
[ENA]
¢þ
>WENV181865371
OGWU01022676
[OGWU] human gut metagenome; faeces
93
17
-
Lys
CTT
[ENA]
¢þ
>WENV181897203
OGXS01054537
[OGXS] human gut metagenome; faeces
168
92
-
Lys
CTT
[ENA]
¢þ
>WENV182403098
OIET01000735
[OIET] human gut metagenome; human gut
9987
9911
-
Lys
CTT
[ENA]
¢þ
>WENV182405413
OIEV01004153
[OIEV] human gut metagenome; human gut
1119
1195
+
Lys
CTT
[ENA]
¢þ
>WENV170668012
LADL02000122
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
7845
7919
+
Lys
CTT
[ENA]
¢þ
>WENV170668156
LADL02001489
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
13428
13502
+
Lys
CTT
[ENA]
¢þ
>WENV170684439
LFRM01039248
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
303
379
+
Lys
CTT
[ENA]
¢þ
>WENV170688798
LFRM01262127
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
955
879
-
Lys
CTT
[ENA]
¢þ
>WENV170722794
LSQX01243117
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
414
338
-
Lys
CTT
[ENA]
¢þ
>C191064448
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
1655996
1655920
-
Lys
CTT
-
¡û
>C191219502
LR215983
Bacillota
Eubacterium limosum [LR215983]
559005
559081
+
Lys
CTT
-
¡û
>W1810609765
QGUD01000011
Bacillota
Eubacterium limosum 8486cho [QGUD]
40013
39937
-
Lys
CTT
[ENA]
¡û
>W1810871712
QUDF01000003
Bacillota
Eubacterium sp. AM05-23 [QUDF]
54529
54605
+
Lys
CTT
[ENA]
¡û
>C11108820
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
1186689
1186765
+
Lys
CTT
[Ensembl]
¡û
>W1511480140
JWIS01000001
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
157128
157052
-
Lys
CTT
[ENA]
¡û
>W11144115
AEQN01000005
Bacillota
Pseudoramibacter alactolyticus ATCC 23263 [AEQN]
29538
29614
+
Lys
CTT
[ENA]
¡û
>C161037784
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
1048261
1048337
+
Lys
CTT
[Ensembl]
¡û
>W1610607119
LFTP01000240
Bacillota
Clostridia bacterium DTU080 [LFTP]
955
879
-
Lys
CTT
[ENA]
¡û
>W1611063129
MBEW01000006
Bacillota
Criibacterium bergeronii CCRI-22567 [MBEW]
68340
68264
-
Lys
CTT
[ENA]
¡û
>W1710525055
FNJF01000033
Bacillota
Eubacterium maltosivorans limosum [FNJF]
17543
17467
-
Lys
CTT
[ENA]
¡û
>W1710530507
FNOU01000005
Bacillota
Eubacterium barkeri [FNOU]
9284
9208
-
Lys
CTT
[ENA]
¡û
>W1710533799
FNRK01000004
Bacillota
Eubacterium aggregans [FNRK]
39341
39417
+
Lys
CTT
[ENA]
¡û
>W1710571979
FOWI01000006
Bacillota
Eubacterium callanderi [FOWI]
213570
213646
+
Lys
CTT
[ENA]
¡û
>W1710591287
FRBP01000004
Bacillota
Eubacterium callanderi [FRBP]
211062
211138
+
Lys
CTT
[ENA]
¡û
>W1710728406
LFTP01000240
Bacillota
Clostridia bacterium DTU080 [LFTP]
955
879
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK