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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148142 (26 seq.)
>W1710809761
LKEU01000029
Bacillota
Acetobacterium wieringae [LKEU]
21472
21548
+
Pro
CGG
[ENA]
¡û
>W1711434398
MIMZ01000006
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
325110
325034
-
Pro
CGG
[ENA]
¡û
>C171101820
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
144376
144300
-
Pro
CGG
-
¡û
>WENV180176654
OAWD01000480
[OAWD] human gut metagenome; faeces
8680
8604
-
Pro
CGG
[ENA]
¢þ
>WENV180498346
OCAG01000082
[OCAG] human gut metagenome; faeces
61541
61465
-
Pro
CGG
[ENA]
¢þ
>WENV180504378
OCAN01001946
[OCAN] human gut metagenome; faeces
7109
7033
-
Pro
CGG
[ENA]
¢þ
>WENV180655627
OCVV010466335
[OCVV] gut metagenome; gut
656
732
+
Pro
CGG
[ENA]
¢þ
>WENV180655628
OCVV010466335
[OCVV] gut metagenome; gut
656
732
+
Pro
CGG
[ENA]
¢þ
>WENV181346599
OFML01047233
[OFML] human gut metagenome; human gut
481
557
+
Pro
CGG
[ENA]
¢þ
>W141150069
AXAC01000007
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
398
322
-
Pro
CGG
[ENA]
¡û
>WENV181865749
OGWU01094305
[OGWU] human gut metagenome; faeces
488
412
-
Pro
CGG
[ENA]
¢þ
>WENV182403027
OIET01000518
[OIET] human gut metagenome; human gut
2312
2236
-
Pro
CGG
[ENA]
¢þ
>WENV182405460
OIEV01005032
[OIEV] human gut metagenome; human gut
169
245
+
Pro
CGG
[ENA]
¢þ
>C191064406
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3364646
3364722
+
Pro
CGG
-
¡û
>C191219520
LR215983
Bacillota
Eubacterium limosum [LR215983]
4701109
4701185
+
Pro
CGG
-
¡û
>W1810609728
QGUD01000001
Bacillota
Eubacterium limosum 8486cho [QGUD]
418988
418912
-
Pro
CGG
[ENA]
¡û
>W1810871737
QUDF01000010
Bacillota
Eubacterium sp. AM05-23 [QUDF]
16263
16187
-
Pro
CGG
[ENA]
¡û
>C11108799
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
618954
619030
+
Pro
CGG
[Ensembl]
¡û
>W1511480145
JWIS01000002
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
133848
133772
-
Pro
CGG
[ENA]
¡û
>C121003938
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
2651841
2651765
-
Pro
CGG
[Ensembl]
¡û
>C161037793
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3597645
3597569
-
Pro
CGG
[Ensembl]
¡û
>W1710525033
FNJF01000008
Bacillota
Eubacterium maltosivorans limosum [FNJF]
119228
119304
+
Pro
CGG
[ENA]
¡û
>W1710530503
FNOU01000003
Bacillota
Eubacterium barkeri [FNOU]
160979
160903
-
Pro
CGG
[ENA]
¡û
>W1710533809
FNRK01000014
Bacillota
Eubacterium aggregans [FNRK]
46677
46601
-
Pro
CGG
[ENA]
¡û
>W1710571950
FOWI01000001
Bacillota
Eubacterium callanderi [FOWI]
359918
359994
+
Pro
CGG
[ENA]
¡û
>W1710591290
FRBP01000005
Bacillota
Eubacterium callanderi [FRBP]
212102
212178
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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