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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148146 (19 seq.)
>W1711434442
MIMZ01000026
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
572578
572502
-
Arg
CCG
[ENA]
¡û
>C171101813
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
4179089
4179013
-
Arg
CCG
-
¡û
>WENV180149220
OAUK01034133
[OAUK] human gut metagenome; faeces
154
230
+
Arg
CCG
[ENA]
¢þ
>WENV180176849
OAWD01002273
[OAWD] human gut metagenome; faeces
4972
4896
-
Arg
CCG
[ENA]
¢þ
>WENV180498469
OCAG01000245
[OCAG] human gut metagenome; faeces
47320
47244
-
Arg
CCG
[ENA]
¢þ
>WENV180504392
OCAN01002215
[OCAN] human gut metagenome; faeces
4946
5022
+
Arg
CCG
[ENA]
¢þ
>WENV181346524
OFML01030529
[OFML] human gut metagenome; human gut
592
516
-
Arg
CCG
[ENA]
¢þ
>WENV182403062
OIET01000630
[OIET] human gut metagenome; human gut
1551
1627
+
Arg
CCG
[ENA]
¢þ
>WENV182405567
OIEV01012057
[OIEV] human gut metagenome; human gut
76
152
+
Arg
CCG
[ENA]
¢þ
>C191064452
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
1056745
1056669
-
Arg
CCG
-
¡û
>C191219510
LR215983
Bacillota
Eubacterium limosum [LR215983]
991645
991721
+
Arg
CCG
-
¡û
>W1810609747
QGUD01000003
Bacillota
Eubacterium limosum 8486cho [QGUD]
1665
1741
+
Arg
CCG
[ENA]
¡û
>W1810871736
QUDF01000008
Bacillota
Eubacterium sp. AM05-23 [QUDF]
135559
135483
-
Arg
CCG
[ENA]
¡û
>C11108851
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
2425155
2425079
-
Arg
CCG
[Ensembl]
¡û
>W1511480147
JWIS01000003
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
228310
228386
+
Arg
CCG
[ENA]
¡û
>C161037787
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
1611288
1611364
+
Arg
CCG
[Ensembl]
¡û
>W1710525030
FNJF01000005
Bacillota
Eubacterium maltosivorans limosum [FNJF]
58818
58742
-
Arg
CCG
[ENA]
¡û
>W1710571962
FOWI01000004
Bacillota
Eubacterium callanderi [FOWI]
443262
443186
-
Arg
CCG
[ENA]
¡û
>W1710591304
FRBP01000011
Bacillota
Eubacterium callanderi [FRBP]
73425
73501
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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