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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148147 (21 seq.)
>W1711434415
MIMZ01000010
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
50427
50503
+
Arg
ACG
[ENA]
¡û
>C171101818
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
394854
394778
-
Arg
ACG
-
¡û
>WENV180176798
OAWD01001403
[OAWD] human gut metagenome; faeces
305
381
+
Arg
ACG
[ENA]
¢þ
>WENV180498578
OCAG01000530
[OCAG] human gut metagenome; faeces
8141
8217
+
Arg
ACG
[ENA]
¢þ
>WENV180504511
OCAN01004568
[OCAN] human gut metagenome; faeces
2876
2800
-
Arg
ACG
[ENA]
¢þ
>WENV181723945
OGPW01064116
[OGPW] human gut metagenome; faeces
113
189
+
Arg
ACG
[ENA]
¢þ
>WENV181890486
OGXN01043091
[OGXN] human gut metagenome; faeces
215
139
-
Arg
ACG
[ENA]
¢þ
>WENV182402944
OIET01000283
[OIET] human gut metagenome; human gut
28148
28072
-
Arg
ACG
[ENA]
¢þ
>WENV182405236
OIEV01001599
[OIEV] human gut metagenome; human gut
626
702
+
Arg
ACG
[ENA]
¢þ
>C191064404
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3134007
3134083
+
Arg
ACG
-
¡û
>C191219518
LR215983
Bacillota
Eubacterium limosum [LR215983]
4458553
4458629
+
Arg
ACG
-
¡û
>W1810609768
QGUD01000013
Bacillota
Eubacterium limosum 8486cho [QGUD]
21375
21299
-
Arg
ACG
[ENA]
¡û
>W1810871739
QUDF01000011
Bacillota
Eubacterium sp. AM05-23 [QUDF]
20243
20167
-
Arg
ACG
[ENA]
¡û
>C11108826
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
3967885
3967809
-
Arg
ACG
[Ensembl]
¡û
>W1511480143
JWIS01000002
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
384319
384243
-
Arg
ACG
[ENA]
¡û
>C161037791
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3806537
3806461
-
Arg
ACG
[Ensembl]
¡û
>W1710525044
FNJF01000017
Bacillota
Eubacterium maltosivorans limosum [FNJF]
61492
61568
+
Arg
ACG
[ENA]
¡û
>W1710530495
FNOU01000001
Bacillota
Eubacterium barkeri [FNOU]
46101
46025
-
Arg
ACG
[ENA]
¡û
>W1710533811
FNRK01000017
Bacillota
Eubacterium aggregans [FNRK]
1817
1741
-
Arg
ACG
[ENA]
¡û
>W1710571948
FOWI01000001
Bacillota
Eubacterium callanderi [FOWI]
114429
114505
+
Arg
ACG
[ENA]
¡û
>W1710591312
FRBP01000014
Bacillota
Eubacterium callanderi [FRBP]
28180
28104
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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