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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148157 (39 seq.)
>W1710797136
LJSU01000009
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
147210
147286
+
Arg
CCG
[ENA]
¡û
>C171108694
CP020474
Alphaproteobacteria
Roseovarius mucosus SMR3 [CP020474]
190954
190878
-
Arg
CCG
-
¡û
>w027741
ABCL01000004
Alphaproteobacteria
Roseovarius sp. TM1035 [ABCL]
184202
184124
-
Arg
CCG
[ENA]
¡û
>w012856
AAMV01000001
Alphaproteobacteria
Roseovarius sp. 217 [AAMV]
409942
409864
-
Arg
CCG
[ENA]
¡û
>W141043783
AMGO01000052
Alphaproteobacteria
Oceaniovalibus guishaninsula JLT2003 [AMGO]
50370
50294
-
Arg
CCG
[ENA]
¡û
>WENV180595676
OCPF01004181
[OCPF] marine metagenome; ENVO.00002150
346
422
+
Arg
CCG
[ENA]
¢þ
>WENV181234235
OFEU01000010
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
193716
193640
-
Arg
CCG
[ENA]
¢þ
>WENV182547145
OJBR01002390
[OJBR] seawater metagenome; Sea water
2096
2020
-
Arg
CCG
[ENA]
¢þ
>WENV182583750
OJHE01001785
[OJHE] seawater metagenome; Sea water
106
30
-
Arg
CCG
[ENA]
¢þ
>WENV182586912
OJHK01012782
[OJHK] seawater metagenome; Sea water
400
476
+
Arg
CCG
[ENA]
¢þ
>WENV182591902
OJIO01014752
[OJIO] seawater metagenome; Sea water
1235
1159
-
Arg
CCG
[ENA]
¢þ
>WENV182592942
OJIS01001801
[OJIS] seawater metagenome; Sea water
2466
2542
+
Arg
CCG
[ENA]
¢þ
>WENV170269220
CERH01074661
[CERH] marine metagenome genome assembly TARA_072_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1600
1524
-
Arg
CCG
[ENA]
¢þ
>WENV170705263
LLEQ01001847
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1255
1331
+
Arg
CCG
[ENA]
¢þ
>WENV170925790
MDTG01090071
[MDTG] marine metagenome; seawater
2825
2901
+
Arg
CCG
[ENA]
¢þ
>WENV170962495
MRWF01018128
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1647
1723
+
Arg
CCG
[ENA]
¢þ
>WENV170963822
MRWG01000869
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
23813
23889
+
Arg
CCG
[ENA]
¢þ
>WENV170964347
MRWG01008784
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1948
2024
+
Arg
CCG
[ENA]
¢þ
>C181123384
CP025808
Alphaproteobacteria
Sulfitobacter sp. SK025 [CP025808]
1855753
1855829
+
Arg
CCG
-
¡û
>C181123448
CP025815
Alphaproteobacteria
Sulfitobacter sp. JL08 [CP025815]
2113017
2112941
-
Arg
CCG
-
¡û
>C181187993
CP030099
Alphaproteobacteria
Roseovarius sp. AK1035 [CP030099]
3133512
3133436
-
Arg
CCG
-
¡û
>C191184398
CP040932
Alphaproteobacteria
Oceanicola sp. D3 [CP040932]
2036318
2036394
+
Arg
CCG
-
¡û
>W09102733
AAIG01000002
Alphaproteobacteria
Jannaschia sp. CCS1 [AAIG]
3581
3657
+
Arg
CCG
[ENA]
¡û
>W141818744
JQLS01000008
Alphaproteobacteria
Roseovarius sp. MCTG156(2b) [JQLS]
1556812
1556736
-
Arg
CCG
[ENA]
¡û
>W1910443137
FWFV01000001
Alphaproteobacteria
Palleronia marisminoris CECT 7066 [FWFV]
44604
44680
+
Arg
CCG
[ENA]
¡û
>W1810580444
QETF01000005
Alphaproteobacteria
Salibaculum griseiflavum WDS4C29 [QETF]
154379
154455
+
Arg
CCG
[ENA]
¡û
>W1810685660
QKZL01000003
Alphaproteobacteria
Palleronia aestuarii DSM 22009 [QKZL]
282033
282109
+
Arg
CCG
[ENA]
¡û
>W1810692271
QLIW01000001
Alphaproteobacteria
Rhodobacteraceae bacterium AsT-22 [QLIW]
219438
219514
+
Arg
CCG
[ENA]
¡û
>W1511518802
JXYH01000057
Alphaproteobacteria
Aestuariivita boseongensis BS-B2 [JXYH]
8204
8128
-
Arg
CCG
[ENA]
¡û
>W1511564702
LADY01000053
Alphaproteobacteria
Roseovarius sp. BRH_c41 [LADY]
95063
94987
-
Arg
CCG
[ENA]
¡û
>W1610014775
AONH01000007
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
306257
306333
+
Arg
CCG
[ENA]
¡û
>W1610661093
LJSU01000009
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
147210
147286
+
Arg
CCG
[ENA]
¡û
>W1710011666
AONH01000007
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
306257
306333
+
Arg
CCG
[ENA]
¡û
>W1710518490
FNEB01000001
Alphaproteobacteria
Lutimaribacter saemankumensis [FNEB]
151070
151146
+
Arg
CCG
[ENA]
¡û
>W1710524226
FNIO01000002
Alphaproteobacteria
Lutimaribacter pacificus [FNIO]
359921
359997
+
Arg
CCG
[ENA]
¡û
>W1710543751
FOAG01000014
Alphaproteobacteria
Roseovarius azorensis [FOAG]
55870
55794
-
Arg
CCG
[ENA]
¡û
>W1710562792
FOPF01000001
Alphaproteobacteria
Palleronia marisminoris [FOPF]
44792
44868
+
Arg
CCG
[ENA]
¡û
>W1710589250
FQZZ01000005
Alphaproteobacteria
Lutimaribacter pacificus [FQZZ]
73145
73221
+
Arg
CCG
[ENA]
¡û
>W1710594757
FSRL01000001
Alphaproteobacteria
Vannielia litorea litoreus [FSRL]
1313596
1313672
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK