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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148200 (124 seq.)
>W1710852509
LLVU01000010
Alphaproteobacteria
Rhodobacter capsulatus [LLVU]
57398
57322
-
Pro
TGG
[ENA]
¡û
>W1710852586
LLVV01000045
Alphaproteobacteria
Rhodobacter capsulatus [LLVV]
211163
211087
-
Pro
TGG
[ENA]
¡û
>W1710991280
LPXO01000003
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
345966
346042
+
Pro
TGG
[ENA]
¡û
>W1711126445
LUOP01000001
Alphaproteobacteria
Maritimibacter sp. REDSEA-S40_B3 [LUOP]
795445
795369
-
Pro
TGG
[ENA]
¡û
>W1711135089
LUYN01000070
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
25074
24998
-
Pro
TGG
[ENA]
¡û
>W1711282578
LZNT01000014
Alphaproteobacteria
Ruegeria sp. PBVC088 [LZNT]
89184
89108
-
Pro
TGG
[ENA]
¡û
>W1711357131
MDHA01000044
Alphaproteobacteria
Thioclava sp. SK-1 [MDHA]
259357
259281
-
Pro
TGG
[ENA]
¡û
>W131164629
ARAY01000002
Alphaproteobacteria
Wenxinia marina DSM 24838 [ARAY]
225457
225381
-
Pro
TGG
[ENA]
¡û
>W1711572398
MNBL01000054
Alphaproteobacteria
Nioella sediminis JS7-11 [MNBL]
53018
52942
-
Pro
TGG
[ENA]
¡û
>W1711572457
MNBW01000017
Alphaproteobacteria
Nioella nitratireducens [MNBW]
55708
55632
-
Pro
TGG
[ENA]
¡û
>W1711642838
MPZQ01000002
Alphaproteobacteria
Thioclava sp. F28-4 [MPZQ]
85426
85350
-
Pro
TGG
[ENA]
¡û
>W1711642897
MPZR01000009
Alphaproteobacteria
Thioclava sp. F36-7 [MPZR]
78145
78069
-
Pro
TGG
[ENA]
¡û
>W1711642928
MPZS01000001
Alphaproteobacteria
Thioclava marina 11.10-0-13 [MPZS]
612381
612305
-
Pro
TGG
[ENA]
¡û
>W1711642978
MPZT01000004
Alphaproteobacteria
Thioclava sp. DLFJ4-1 [MPZT]
247114
247190
+
Pro
TGG
[ENA]
¡û
>W1711643037
MPZU01000008
Alphaproteobacteria
Thioclava sp. DLFJ5-1 [MPZU]
89893
89969
+
Pro
TGG
[ENA]
¡û
>W1711643084
MPZV01000005
Alphaproteobacteria
Thioclava sediminum TAW-CT134 [MPZV]
267596
267520
-
Pro
TGG
[ENA]
¡û
>W1711643107
MPZW01000003
Alphaproteobacteria
Thioclava sp. L04-15 [MPZW]
121678
121602
-
Pro
TGG
[ENA]
¡û
>W1711643161
MPZX01000002
Alphaproteobacteria
Thioclava sp. F36-6 [MPZX]
270382
270306
-
Pro
TGG
[ENA]
¡û
>W1711947215
NBNX01000005
Alphaproteobacteria
Thioclava sp. IC9 [NBNX]
105687
105763
+
Pro
TGG
[ENA]
¡û
>W1711947262
NBNY01000004
Alphaproteobacteria
Thioclava sp. F1Mire-8 [NBNY]
221084
221160
+
Pro
TGG
[ENA]
¡û
>W1711947288
NBNZ01000002
Alphaproteobacteria
Thioclava sp. F42-5 [NBNZ]
766567
766643
+
Pro
TGG
[ENA]
¡û
>W1711947353
NBOA01000006
Alphaproteobacteria
Thioclava sp. F34-6 [NBOA]
186645
186569
-
Pro
TGG
[ENA]
¡û
>W1711947380
NBOB01000003
Alphaproteobacteria
Thioclava sp. JM3 [NBOB]
214533
214609
+
Pro
TGG
[ENA]
¡û
>W1711959006
NBXF01000008
Alphaproteobacteria
Thioclava electrotropha ElOx9 [NBXF]
48083
48007
-
Pro
TGG
[ENA]
¡û
>W1712106660
NIVZ01000001
Alphaproteobacteria
Mameliella alba atlantica [NIVZ]
16653
16729
+
Pro
TGG
[ENA]
¡û
>W1712106709
NIWA01000001
Alphaproteobacteria
Mameliella alba lacteus [NIWA]
186128
186052
-
Pro
TGG
[ENA]
¡û
>W1712106763
NIWB01000004
Alphaproteobacteria
Mameliella alba pacificum [NIWB]
361501
361425
-
Pro
TGG
[ENA]
¡û
>W1712106796
NIWC01000001
Alphaproteobacteria
Mameliella alba phaeodactyli [NIWC]
20253
20329
+
Pro
TGG
[ENA]
¡û
>C171033692
CP014796
Alphaproteobacteria
Salipiger profundus JLT2016 [CP014796]
3672796
3672872
+
Pro
TGG
-
¡û
>C171035439
CP015093
Alphaproteobacteria
Salipiger abyssi JLT2014 [CP015093]
3742022
3742098
+
Pro
TGG
-
¡û
>C171094363
CP019437
Alphaproteobacteria
Thioclava nitratireducens 25B10_4 [CP019437]
2980935
2980859
-
Pro
TGG
-
¡û
>W131050060
AMWC01000578
Alphaproteobacteria
Donghicola sp. S598 [AMWC]
377
453
+
Pro
TGG
[ENA]
¡û
>W131183017
ARRM01000008
Alphaproteobacteria
Salipiger mucosus DSM 16094 [ARRM]
45565
45641
+
Pro
TGG
[ENA]
¡û
>w023643
AAYA01000010
Alphaproteobacteria
Sagittula stellata E-37 [AAYA]
57874
57796
-
Pro
TGG
[ENA]
¡û
>w018823
AATQ01000028
Alphaproteobacteria
Salipiger bermudensis HTCC2601 [AATQ]
22876
22954
+
Pro
TGG
[ENA]
¡û
>w012791
AAMT01000017
Alphaproteobacteria
Maritimibacter alkaliphilus HTCC2654 [AAMT]
5974
5896
-
Pro
TGG
[ENA]
¡û
>WENV180103170
OAPA01004641
[OAPA] marine metagenome; ENVO:00002010
108
184
+
Pro
TGG
[ENA]
¢þ
>W141064411
APVH01000039
Alphaproteobacteria
Salipiger mucosus DSM 16094 [APVH]
45559
45635
+
Pro
TGG
[ENA]
¡û
>W141065765
AQQY01000001
Alphaproteobacteria
Actibacterium atlanticum 22II-S11-z10 [AQQY]
341604
341680
+
Pro
TGG
[ENA]
¡û
>W141065880
AQRC01000017
Alphaproteobacteria
Thioclava atlantica 13D2W-2 [AQRC]
17551
17627
+
Pro
TGG
[ENA]
¡û
>W141082483
AUNB01000001
Alphaproteobacteria
Thioclava indica DT23-4 [AUNB]
287615
287539
-
Pro
TGG
[ENA]
¡û
>W141082578
AUND01000001
Alphaproteobacteria
Thioclava pacifica DSM 10166 [AUND]
456770
456846
+
Pro
TGG
[ENA]
¡û
>WENV181120540
OEFK01009492
[OEFK] marine metagenome; ENVO:00002010 seawater
149
225
+
Pro
TGG
[ENA]
¢þ
>WENV181234080
OFET01002129
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
3476
3400
-
Pro
TGG
[ENA]
¢þ
>W141142911
AWRV01000361
Alphaproteobacteria
Rhodobacteraceae bacterium PD-2 [AWRV]
45931
45855
-
Pro
TGG
[ENA]
¡û
>W141191569
AYPR01000026
Alphaproteobacteria
Rhodobacter capsulatus DE442 [AYPR]
227771
227695
-
Pro
TGG
[ENA]
¡û
>W141191714
AYPY01000022
Alphaproteobacteria
Rhodobacter capsulatus YW1 [AYPY]
22421
22345
-
Pro
TGG
[ENA]
¡û
>W141191785
AYPZ01000049
Alphaproteobacteria
Rhodobacter capsulatus YW2 [AYPZ]
5172
5096
-
Pro
TGG
[ENA]
¡û
>W141191823
AYQA01000084
Alphaproteobacteria
Rhodobacter capsulatus B6 [AYQA]
214093
214017
-
Pro
TGG
[ENA]
¡û
>W141191862
AYQB01000032
Alphaproteobacteria
Rhodobacter capsulatus Y262 [AYQB]
26480
26404
-
Pro
TGG
[ENA]
¡û
>W141191908
AYQC01000026
Alphaproteobacteria
Rhodobacter capsulatus R121 [AYQC]
151543
151467
-
Pro
TGG
[ENA]
¡û
>W141199835
AYXI01000020
Alphaproteobacteria
Defluviimonas sp. 20V17 [AYXI]
27369
27293
-
Pro
TGG
[ENA]
¡û
>WENV182591241
OJIL01004035
[OJIL] seawater metagenome; Sea water
1144
1220
+
Pro
TGG
[ENA]
¢þ
>WENV183707387
PDWI01008198
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
7163
7087
-
Pro
TGG
[ENA]
¢þ
>WENV183710636
PDWI01050545
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2074
2150
+
Pro
TGG
[ENA]
¢þ
>WENV183713501
PDWI01141112
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
918
842
-
Pro
TGG
[ENA]
¢þ
>WENV183717354
PDWJ01000785
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
23129
23205
+
Pro
TGG
[ENA]
¢þ
>WENV183720339
PDWJ01031876
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1289
1213
-
Pro
TGG
[ENA]
¢þ
>WENV170013106
ATLU01000018
[ATLU] bioreactor metagenome; continuous culture bioreactor inoculated with sediment procaryotes from the German
90413
90337
-
Pro
TGG
[ENA]
¢þ
>WENV170136708
CENV01064143
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
140
216
+
Pro
TGG
[ENA]
¢þ
>WENV170298652
CESF01161831
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
416
492
+
Pro
TGG
[ENA]
¢þ
>WENV170550639
CXWF01006582
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
9492
9568
+
Pro
TGG
[ENA]
¢þ
>WENV170635426
JDSF01016608
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
18
94
+
Pro
TGG
[ENA]
¢þ
>WENV170635674
JDSH01000022
[JDSH] bioreactor metagenome; continuous culture bioreactor electron acceptor NO2- transfer2; day 38 after inoculation
22185
22109
-
Pro
TGG
[ENA]
¢þ
>WENV170809517
MDSW01133571
[MDSW] marine metagenome; seawater
3741
3665
-
Pro
TGG
[ENA]
¢þ
>WENV170920793
MDTG01003100
[MDTG] marine metagenome; seawater
79562
79486
-
Pro
TGG
[ENA]
¢þ
>W141485048
JFZB01000037
Alphaproteobacteria
Paenirhodobacter enshiensis [JFZB]
36390
36466
+
Pro
TGG
[ENA]
¡û
>C181054571
CP021913
Alphaproteobacteria
Sagittula sp. P11 [CP021913]
4507869
4507793
-
Pro
TGG
-
¡û
>C181068107
CP022540
Alphaproteobacteria
Antarctobacter heliothermus SMS3 [CP022540]
3438418
3438494
+
Pro
TGG
-
¡û
>W141531718
JHEH01000016
Alphaproteobacteria
Thioclava dalianensis [JHEH]
64377
64301
-
Pro
TGG
[ENA]
¡û
>C191160500
CP038492
Alphaproteobacteria
Rhodophyticola sp. CCM32 [CP038492]
1378724
1378800
+
Pro
TGG
-
¡û
>W09132541
ACNW01000076
Alphaproteobacteria
Citreicella sp. SE45 [ACNW]
56067
56143
+
Pro
TGG
[ENA]
¡û
>W1910212600
FMJB01000055
Alphaproteobacteria
Donghicola eburneus KarMa [FMJB]
243391
243315
-
Pro
TGG
[ENA]
¡û
>W1910499798
FXYF01000024
Alphaproteobacteria
Maliponia aquimaris CECT 8898 [FXYF]
14358
14434
+
Pro
TGG
[ENA]
¡û
>W1910499864
FXYH01000004
Alphaproteobacteria
Pelagimonas varians CECT 8663 [FXYH]
68113
68037
-
Pro
TGG
[ENA]
¡û
>W1910548454
FZON01000021
Alphaproteobacteria
Antarctobacter heliothermus DSM 11445 [FZON]
48901
48825
-
Pro
TGG
[ENA]
¡û
>W1910584246
JXTF01000053
Alphaproteobacteria
Roseovarius sp. JS7-11 [JXTF]
53018
52942
-
Pro
TGG
[ENA]
¡û
>W1911283627
NTJD01000003
Alphaproteobacteria
Pseudothioclava arenosa CAU 1312 [NTJD]
329530
329606
+
Pro
TGG
[ENA]
¡û
>W1911495124
OBMP01000006
Alphaproteobacteria
Rhodobacter sp. JA431 [OBMP]
180274
180198
-
Pro
TGG
[ENA]
¡û
>W1911495372
OBMT01000012
Alphaproteobacteria
Rhodobacter maris JA276 [OBMT]
39504
39428
-
Pro
TGG
[ENA]
¡û
>W1911538456
OMOJ01000003
Alphaproteobacteria
Pseudoprimorskyibacter insulae CECT 8871 [OMOJ]
85765
85689
-
Pro
TGG
[ENA]
¡û
>W1911575827
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
2788295
2788219
-
Pro
TGG
[ENA]
¡û
>W1810120345
PHSN01000010
Alphaproteobacteria
Acidimangrovimonas sediminis MS2-2 [PHSN]
128204
128128
-
Pro
TGG
[ENA]
¡û
>W1810356743
PVND01000003
Alphaproteobacteria
Meinhardsimonia xiamenensis DSM 24422 [PVND]
236668
236592
-
Pro
TGG
[ENA]
¡û
>W1810364940
PVTQ01000001
Alphaproteobacteria
Donghicola tyrosinivorans DSM 100212 [PVTQ]
321344
321420
+
Pro
TGG
[ENA]
¡û
>W1810477602
QAOY01000001
Alphaproteobacteria
Mameliella alba DSM 26384 [QAOY]
450971
451047
+
Pro
TGG
[ENA]
¡û
>W1810486270
QAXT01000007
Alphaproteobacteria
Rhodobacter aestuarii JA296 [QAXT]
178851
178775
-
Pro
TGG
[ENA]
¡û
>W1810503966
QBKN01000022
Alphaproteobacteria
Allosediminivita pacifica DSM 29329 [QBKN]
77660
77584
-
Pro
TGG
[ENA]
¡û
>W1810584536
QFBB01000007
Alphaproteobacteria
Thioclava sp. NG1 [QFBB]
53554
53630
+
Pro
TGG
[ENA]
¡û
>W1810596877
QGGW01000001
Alphaproteobacteria
Roseicyclus mahoneyensis DSM 16097 [QGGW]
750091
750015
-
Pro
TGG
[ENA]
¡û
>W1810672401
QJTK01000001
Alphaproteobacteria
Rhodobacter viridis JA737 [QJTK]
107680
107756
+
Pro
TGG
[ENA]
¡û
>W1810676750
QKMF01000004
Alphaproteobacteria
Pelagimonas varians DSM 23678 [QKMF]
289209
289285
+
Pro
TGG
[ENA]
¡û
>W1810685810
QKZO01000003
Alphaproteobacteria
Rhodobacter capsulatus DSM 1710 [QKZO]
125949
125873
-
Pro
TGG
[ENA]
¡û
>W1810721630
QNSD01000009
Alphaproteobacteria
Rhodobacter sp. 140A [QNSD]
55933
55857
-
Pro
TGG
[ENA]
¡û
>W1810721902
QNTQ01000008
Alphaproteobacteria
Rhodosalinus halophilus E84 [QNTQ]
138087
138163
+
Pro
TGG
[ENA]
¡û
>W1810733759
QOHR01000018
Alphaproteobacteria
Rhodosalinus sediminis WDN1C137 [QOHR]
8648
8724
+
Pro
TGG
[ENA]
¡û
>W1810914891
QVQC01000016
Alphaproteobacteria
Rhodobacteraceae bacterium W635 [QVQC]
21040
21116
+
Pro
TGG
[ENA]
¡û
>C151006146
CP004372
Alphaproteobacteria
Roseibacterium elongatum DSM 19469 DFL-43 [CP004372]
2576527
2576603
+
Pro
TGG
[Ensembl]
¡û
>C10110637
CP001312
Alphaproteobacteria
Rhodobacter capsulatus SB 1003 [CP001312]
2516895
2516819
-
Pro
TGG
[Ensembl]
¡û
>W1511387326
JSUQ01000004
Alphaproteobacteria
Mameliella alba UMTAT08 [JSUQ]
199917
199841
-
Pro
TGG
[ENA]
¡û
>W1610014749
AONG01000012
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
225000
224924
-
Pro
TGG
[ENA]
¡û
>W1610597328
LFEO01000060
Alphaproteobacteria
Alphaproteobacteria bacterium casp-alpha3 [LFEO]
7135
7211
+
Pro
TGG
[ENA]
¡û
>W1610715648
LLVU01000010
Alphaproteobacteria
Rhodobacter capsulatus [LLVU]
57398
57322
-
Pro
TGG
[ENA]
¡û
>W1610715725
LLVV01000045
Alphaproteobacteria
Rhodobacter capsulatus [LLVV]
211163
211087
-
Pro
TGG
[ENA]
¡û
>W1610845952
LPXO01000003
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
345966
346042
+
Pro
TGG
[ENA]
¡û
>W1610937378
LUOP01000001
Alphaproteobacteria
Maritimibacter sp. REDSEA-S40_B3 [LUOP]
795445
795369
-
Pro
TGG
[ENA]
¡û
>W1610946209
LUYN01000070
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
25074
24998
-
Pro
TGG
[ENA]
¡û
>WENV078185
AAFZ01004441
Fossil microbial community from Whale Fall (Santa Cruz Basin)
316
394
+
Pro
TGG
[ENA]
>W1710011640
AONG01000012
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
225000
224924
-
Pro
TGG
[ENA]
¡û
>W1710512318
FMZI01000001
Alphaproteobacteria
Mameliella alba [FMZI]
450851
450927
+
Pro
TGG
[ENA]
¡û
>W1710514284
FNAV01000011
Alphaproteobacteria
Salipiger thiooxidans [FNAV]
187876
187952
+
Pro
TGG
[ENA]
¡û
>W1710514437
FNAY01000001
Alphaproteobacteria
Rhodobacter capsulatus [FNAY]
367963
368039
+
Pro
TGG
[ENA]
¡û
>W1710520688
FNFV01000002
Alphaproteobacteria
Meinhardsimonia xiamenensis xiamenense [FNFV]
369192
369268
+
Pro
TGG
[ENA]
¡û
>W1710529562
FNOB01000018
Alphaproteobacteria
Allgaiera indica [FNOB]
70659
70583
-
Pro
TGG
[ENA]
¡û
>W1710530931
FNPF01000003
Alphaproteobacteria
Citreimonas salinaria [FNPF]
236526
236450
-
Pro
TGG
[ENA]
¡û
>W1710552367
FOGU01000006
Alphaproteobacteria
Tranquillimonas rosea roseus [FOGU]
329065
329141
+
Pro
TGG
[ENA]
¡û
>W1710558243
FOLR01000006
Alphaproteobacteria
Salipiger profundus nanhaiensis [FOLR]
145092
145016
-
Pro
TGG
[ENA]
¡û
>W1710570309
FOVB01000001
Alphaproteobacteria
Thioclava dalianensis [FOVB]
65257
65181
-
Pro
TGG
[ENA]
¡û
>W1710573884
FOXV01000009
Alphaproteobacteria
Roseivivax halotolerans [FOXV]
137312
137236
-
Pro
TGG
[ENA]
¡û
>W1710574007
FOXY01000002
Alphaproteobacteria
Donghicola eburneus [FOXY]
224232
224156
-
Pro
TGG
[ENA]
¡û
>W1710587500
FQYO01000002
Alphaproteobacteria
Wenxinia saemankumensis [FQYO]
761832
761908
+
Pro
TGG
[ENA]
¡û
>W1710598827
FTOG01000008
Alphaproteobacteria
Rhodobacter aestuarii [FTOG]
56921
56997
+
Pro
TGG
[ENA]
¡û
>W1710609086
FXBQ01000001
Alphaproteobacteria
Maritimibacter sp. HL-12 [FXBQ]
3134877
3134953
+
Pro
TGG
[ENA]
¡û
>W1710718652
LFEO01000060
Alphaproteobacteria
Alphaproteobacteria bacterium casp-alpha3 [LFEO]
7135
7211
+
Pro
TGG
[ENA]
¡û
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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