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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148243 (104 seq.)
>W1710857595
LMAJ01000028
Bacteroidota
Flavobacteriaceae bacterium CRH [LMAJ]
40015
39939
-
Ala
GGC
[ENA]
¡û
>W1710868419
LMJB01000005
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
1166890
1166814
-
Ala
GGC
[ENA]
¡û
>W1710872495
LMMA01000012
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
458144
458068
-
Ala
GGC
[ENA]
¡û
>W1710890632
LNBW01000054
Bacteroidota
Bacteroidetes bacterium OLB9 [LNBW]
49902
49976
+
Ala
GGC
[ENA]
¡û
>W1711138911
LVEN01000010
Bacteroidota
Flavobacterium piscis [LVEN]
142963
143039
+
Ala
GGC
[ENA]
¡û
>W1711139016
LVEP01000017
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
234455
234379
-
Ala
GGC
[ENA]
¡û
>W1711513051
MLFK01000002
Bacteroidota
Flavobacterium johnsoniae [MLFK]
445852
445928
+
Ala
GGC
[ENA]
¡û
>C171063343
CP017479
Bacteroidota
Flavobacterium gilvum EM1308 [CP017479]
586221
586145
-
Ala
GGC
-
¡û
>C171066037
CP017688
Bacteroidota
Flavobacterium crassostreae LPB0076 [CP017688]
965628
965552
-
Ala
GGC
-
¡û
>C171083197
CP018760
Bacteroidota
Maribacter hydrothermalis T28 [CP018760]
1798928
1798852
-
Ala
GGC
-
¡û
>W131225307
AUDL01000012
Bacteroidota
Flavobacterium denitrificans DSM 15936 [AUDL]
188647
188571
-
Ala
GGC
[ENA]
¡û
>W131226995
AUEU01000011
Bacteroidota
Flavobacterium sp. URHB0058 [AUEU]
135411
135487
+
Ala
GGC
[ENA]
¡û
>W131229164
AUGO01000015
Bacteroidota
Flavobacterium soli DSM 19725 [AUGO]
7464
7540
+
Ala
GGC
[ENA]
¡û
>W131224687
AUCZ01000008
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
172075
171999
-
Ala
GGC
[ENA]
¡û
>C009393
CP000685
Bacteroidota
Flavobacterium johnsoniae UW101 UW101; ATCC 17061 [CP000685]
636553
636629
+
Ala
GGC
[Ensembl]
¡û
>w015424
AAPD01000001
Bacteroidota
Flavobacteria bacterium BBFL7 [AAPD]
757506
757584
+
Ala
GGC
[ENA]
¡û
>W141238758
BBMJ01000001
Bacteroidota
Nonlabens ulvanivorans [BBMJ]
300769
300843
+
Ala
GGC
[ENA]
¡û
>W141238787
BBMK01000001
Bacteroidota
Nonlabens ulvanivorans [BBMK]
759087
759161
+
Ala
GGC
[ENA]
¡û
>W141238840
BBMM01000001
Bacteroidota
Nonlabens ulvanivorans [BBMM]
491018
491092
+
Ala
GGC
[ENA]
¡û
>W141289749
JARP01000001
Bacteroidota
Flavobacterium sp. KJJ [JARP]
1374562
1374638
+
Ala
GGC
[ENA]
¡û
>W141291496
JASY01000004
Bacteroidota
Flavobacterium chungangense LMG 26729 [JASY]
219793
219717
-
Ala
GGC
[ENA]
¡û
>WENV183730042
PJTR01000390
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
16395
16321
-
Ala
GGC
[ENA]
¢þ
>WENV183734773
PJUA01000008
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
128975
129049
+
Ala
GGC
[ENA]
¢þ
>WENV183735773
PJUB01002039
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
632
706
+
Ala
GGC
[ENA]
¢þ
>WENV183736059
PJUC01000009
[PJUC] soil metagenome; Soil enriched on filter paper
128880
128954
+
Ala
GGC
[ENA]
¢þ
>WENV170176879
CEOS01134130
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
370
444
+
Ala
GGC
[ENA]
¢þ
>WENV170263352
CERC01038300
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
15084
15008
-
Ala
GGC
[ENA]
¢þ
>WENV170288461
CERX01096199
[CERX] marine metagenome genome assembly TARA_068_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
369
293
-
Ala
GGC
[ENA]
¢þ
>WENV170470121
CEVF01154742
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
54846
54920
+
Ala
GGC
[ENA]
¢þ
>WENV170554494
CXWK01073194
[CXWK] wastewater metagenome; activated sludge
829
905
+
Ala
GGC
[ENA]
¢þ
>WENV170595925
FUFK012025129
[FUFK] metagenome; unknown
275
351
+
Ala
GGC
[ENA]
¢þ
>WENV170672173
LAZR01000017
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
193539
193465
-
Ala
GGC
[ENA]
¢þ
>WENV170826375
MDSY01109418
[MDSY] marine metagenome; seawater
142892
142816
-
Ala
GGC
[ENA]
¢þ
>WENV170925772
MDTG01089602
[MDTG] marine metagenome; seawater
6384
6308
-
Ala
GGC
[ENA]
¢þ
>C181168516
CP028811
Bacteroidota
Flavobacterium magnum HYN0048 [CP028811]
961574
961500
-
Ala
GGC
-
¡û
>C181175179
CP029151
Bacteroidota
Dokdonia sp. Dokd-P16 [CP029151]
1378076
1378152
+
Ala
GGC
-
¡û
>C181175928
CP029187
Bacteroidota
Flavobacterium pallidum HYN0049 [CP029187]
979021
979095
+
Ala
GGC
-
¡û
>C181190974
CP030261
Bacteroidota
Flavobacterium fluviale HYN0086 [CP030261]
602537
602611
+
Ala
GGC
-
¡û
>C191127226
CP034549
Bacteroidota
Nonlabens ponticola MJ115 [CP034549]
786789
786863
+
Ala
GGC
-
¡û
>W141727217
JNCP01000092
Bacteroidota
Flavobacterium gilvum EM1308 [JNCP]
32023
32099
+
Ala
GGC
[ENA]
¡û
>W09105492
AAPM01000012
Bacteroidota
Flavobacterium johnsoniae UW101 [AAPM]
77265
77189
-
Ala
GGC
[ENA]
¡û
>W141805216
JPJI01000032
Bacteroidota
Nonlabens ulvanivorans [JPJI]
341990
341916
-
Ala
GGC
[ENA]
¡û
>W1910183299
BJNP01000013
Bacteroidota
Flavobacterium flevense NBRC 14960 [BJNP]
49099
49023
-
Ala
GGC
[ENA]
¡û
>W1910577913
JUIV01000004
Bacteroidota
Flavobacterium anhuiense RCM74 [JUIV]
127355
127429
+
Ala
GGC
[ENA]
¡û
>W1910785628
MQUC01000003
Bacteroidota
Nonlabens agnitus JCM 17109 [MQUC]
2376193
2376119
-
Ala
GGC
[ENA]
¡û
>W1910792756
MRCM01000003
Bacteroidota
Flavobacterium sp. ACN2 [MRCM]
146352
146426
+
Ala
GGC
[ENA]
¡û
>W1910793012
MRCQ01000009
Bacteroidota
Flavobacterium sp. ACN6 [MRCQ]
190356
190282
-
Ala
GGC
[ENA]
¡û
>W1910805297
MTPW01000001
Bacteroidota
Nonlabens arenilitoris KCTC 32109 [MTPW]
1568696
1568770
+
Ala
GGC
[ENA]
¡û
>W1910805333
MTQF01000003
Bacteroidota
[Flexibacter] sp. ATCC 35103 [MTQF]
762191
762117
-
Ala
GGC
[ENA]
¡û
>W1910808871
MUGR01000068
Bacteroidota
Flavobacterium aquidurense DSM 18293 [MUGR]
4269
4343
+
Ala
GGC
[ENA]
¡û
>W1910808892
MUGS01000009
Bacteroidota
Flavobacterium araucananum DSM 24704 [MUGS]
36266
36192
-
Ala
GGC
[ENA]
¡û
>W1910809145
MUGX01000013
Bacteroidota
Flavobacterium hibernum ATCC 51468 [MUGX]
130280
130354
+
Ala
GGC
[ENA]
¡û
>W1910809282
MUGZ01000026
Bacteroidota
Flavobacterium johnsoniae UW101 ATCC 17061 [MUGZ]
130362
130436
+
Ala
GGC
[ENA]
¡û
>W1910809363
MUHB01000011
Bacteroidota
Flavobacterium pectinovorum ATCC 19366 [MUHB]
131576
131650
+
Ala
GGC
[ENA]
¡û
>W1910809387
MUHC01000008
Bacteroidota
Flavobacterium piscis CCUG 60099 [MUHC]
198688
198612
-
Ala
GGC
[ENA]
¡û
>W1911139446
NOXX01000200
Bacteroidota
Flavobacterium aurantiibacter TH167 [NOXX]
26101
26175
+
Ala
GGC
[ENA]
¡û
>W1810156533
PJBJ01000030
Bacteroidota
Flavobacterium sp. ALD4 [PJBJ]
635632
635706
+
Ala
GGC
[ENA]
¡û
>W1810356561
PVNA01000001
Bacteroidota
Nonlabens ulvanivorans DSM 22727 [PVNA]
341527
341453
-
Ala
GGC
[ENA]
¡û
>W1810365424
PVUB01000002
Bacteroidota
Flavobacterium granuli DSM 17797 [PVUB]
503926
504000
+
Ala
GGC
[ENA]
¡û
>W1810475396
QAIZ01000513
Bacteroidota
Flavobacterium sp. HMWF030 [QAIZ]
3820
3894
+
Ala
GGC
[ENA]
¡û
>W1810580558
QETH01000017
Bacteroidota
Flavobacterium sp. HTF [QETH]
53500
53574
+
Ala
GGC
[ENA]
¡û
>W1810596034
QGGJ01000001
Bacteroidota
Flavobacterium araucananum DSM 24704 [QGGJ]
134935
135009
+
Ala
GGC
[ENA]
¡û
>W1810657117
QJGZ01000039
Bacteroidota
Flavobacterium sharifuzzamanii A7.6 [QJGZ]
144784
144858
+
Ala
GGC
[ENA]
¡û
>W1810657748
QJHK01000012
Bacteroidota
Flavobacterium cheongpyeongense IMCC34759 [QJHK]
121615
121689
+
Ala
GGC
[ENA]
¡û
>W1810669747
QJRI01000173
Bacteroidota
Flavobacterium nitrogenifigens NXU-44 [QJRI]
25336
25410
+
Ala
GGC
[ENA]
¡û
>W1810685950
QKZR01000001
Bacteroidota
Nonlabens dokdonensis DSM 17205 [QKZR]
1113136
1113062
-
Ala
GGC
[ENA]
¡û
>W1810722584
QNUX01000003
Bacteroidota
Flavobacterium psychrolimnae LMG 22018 [QNUX]
232583
232657
+
Ala
GGC
[ENA]
¡û
>W1810761087
QPKV01000013
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
136199
136277
+
Ala
GGC
[ENA]
¡û
>W1810763355
QQBA01000003
Bacteroidota
Flavobacterium glaciei DSM 19728 [QQBA]
192917
192843
-
Ala
GGC
[ENA]
¡û
>W1810885472
QUNI01000014
Bacteroidota
Flavobacterium aquicola DSM 100880 [QUNI]
60601
60527
-
Ala
GGC
[ENA]
¡û
>W1510012974
BBNT01000001
Bacteroidota
Nonlabens ulvanivorans JCM 19275 [BBNT]
671925
671999
+
Ala
GGC
[ENA]
¡û
>C11111626
CP002528
Bacteroidota
Dokdonia sp. 4H-3-7-5 [CP002528]
1310215
1310139
-
Ala
GGC
[Ensembl]
¡û
>W1511312004
JPRK01000011
Bacteroidota
Flavobacterium hibernum DSM 12611 [JPRK]
276689
276765
+
Ala
GGC
[ENA]
¡û
>W1511390961
JSYN01000011
Bacteroidota
Pedobacter kyungheensis KACC 16221 [JSYN]
38357
38433
+
Ala
GGC
[ENA]
¡û
>W1511508986
JXQR01000031
Bacteroidota
Flavobacterium sp. MEB061 [JXQR]
14956
15032
+
Ala
GGC
[ENA]
¡û
>C121017011
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
3423938
3424012
+
Ala
GGC
[Ensembl]
¡û
>W121086512
AKJZ01000017
Bacteroidota
Flavobacterium sp. CF136 [AKJZ]
39498
39422
-
Ala
GGC
[ENA]
¡û
>C131001116
CP001397
Bacteroidota
Nonlabens dokdonensis DSW-6 [CP001397]
1333772
1333696
-
Ala
GGC
[Ensembl]
¡û
>W1610534862
JRLF01000009
Bacteroidota
Flavobacterium aquidurense [JRLF]
135623
135699
+
Ala
GGC
[ENA]
¡û
>W1610535051
JRLW01000005
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
37223
37299
+
Ala
GGC
[ENA]
¡û
>W1610584200
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
362078
362004
-
Ala
GGC
[ENA]
¡û
>W1610588074
LDPE01000002
Bacteroidota
Maribacter dokdonensis DSW-8 [LDPE]
479174
479250
+
Ala
GGC
[ENA]
¡û
>W1610719976
LMAJ01000028
Bacteroidota
Flavobacteriaceae bacterium CRH [LMAJ]
40015
39939
-
Ala
GGC
[ENA]
¡û
>W1610730765
LMJB01000005
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
1166890
1166814
-
Ala
GGC
[ENA]
¡û
>W1610734841
LMMA01000012
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
458144
458068
-
Ala
GGC
[ENA]
¡û
>W1610751069
LNBW01000054
Bacteroidota
Bacteroidetes bacterium OLB9 [LNBW]
49902
49976
+
Ala
GGC
[ENA]
¡û
>W1610949919
LVEN01000010
Bacteroidota
Flavobacterium piscis [LVEN]
142963
143039
+
Ala
GGC
[ENA]
¡û
>W1610950024
LVEP01000017
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
234455
234379
-
Ala
GGC
[ENA]
¡û
>W1710512304
FMZH01000012
Bacteroidota
Pedobacter soli [FMZH]
109886
109810
-
Ala
GGC
[ENA]
¡û
>W1710533298
FNRA01000005
Bacteroidota
Pedobacter hartonius [FNRA]
153370
153444
+
Ala
GGC
[ENA]
¡û
>W1710542913
FNZN01000002
Bacteroidota
Maribacter orientalis [FNZN]
624811
624735
-
Ala
GGC
[ENA]
¡û
>W1710555470
FOJM01000011
Bacteroidota
Pedobacter suwonensis [FOJM]
189785
189709
-
Ala
GGC
[ENA]
¡û
>W1710585057
FQWB01000001
Bacteroidota
Flavobacterium fluvii [FQWB]
340505
340429
-
Ala
GGC
[ENA]
¡û
>W1710585311
FQWG01000037
Bacteroidota
Flavobacterium frigidimaris [FQWG]
3363
3287
-
Ala
GGC
[ENA]
¡û
>W1710585351
FQWH01000011
Bacteroidota
Flavobacterium johnsoniae [FQWH]
131174
131250
+
Ala
GGC
[ENA]
¡û
>W1710585725
FQWO01000006
Bacteroidota
Flavobacterium granuli [FQWO]
21946
22020
+
Ala
GGC
[ENA]
¡û
>W1710589935
FRAO01000008
Bacteroidota
Flavobacterium johnsoniae [FRAO]
130568
130644
+
Ala
GGC
[ENA]
¡û
>W1710591712
FRBX01000006
Bacteroidota
Flavobacterium pectinovorum [FRBX]
276055
275979
-
Ala
GGC
[ENA]
¡û
>W1710591939
FRCC01000002
Bacteroidota
Flavobacterium flevense [FRCC]
87623
87699
+
Ala
GGC
[ENA]
¡û
>W1710600189
FTPU01000017
Bacteroidota
Epilithonimonas bovis DSM 19482 [FTPU]
32385
32461
+
Ala
GGC
[ENA]
¡û
>W1710637098
JRLF01000009
Bacteroidota
Flavobacterium aquidurense [JRLF]
135623
135699
+
Ala
GGC
[ENA]
¡û
>W1710637287
JRLW01000005
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
37223
37299
+
Ala
GGC
[ENA]
¡û
>W1710703348
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
362078
362004
-
Ala
GGC
[ENA]
¡û
>W1710707354
LDPE01000002
Bacteroidota
Maribacter dokdonensis DSW-8 [LDPE]
479174
479250
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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