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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148243 (10 seq.)
>WENV180233978
OBCQ01005121
[OBCQ] human gut metagenome; human gut
1670
1593
-
Arg
CCT
[ENA]
¡û
>WENV180338420
OBLI01000316
[OBLI] pig gut metagenome; faeces
47113
47190
+
Arg
CCT
[ENA]
¡û
>WENV180564258
OCLD01051284
[OCLD] human gut metagenome; human gut
245
168
-
Arg
CCT
[ENA]
¡û
>WENV181870789
OGWY01028053
[OGWY] human gut metagenome; faeces
1543
1466
-
Arg
CCT
[ENA]
¡û
>WENV181958222
OGZL01067619
[OGZL] human gut metagenome; faeces
127
204
+
Arg
CCT
[ENA]
¡û
>WENV182964365
OKWR01001506
[OKWR] human gut metagenome; human gut
4077
4154
+
Arg
CCT
[ENA]
¡û
>WENV183362080
OLXK01001787
[OLXK] human gut metagenome; feces
7040
6963
-
Arg
CCT
[ENA]
¡û
>WENV183409882
OMAG01014189
[OMAG] human gut metagenome; feces
224
301
+
Arg
CCT
[ENA]
¡û
>WENV183657684
OQWI01028481
[OQWI] human gut metagenome; human gut
568
645
+
Arg
CCT
[ENA]
¡û
>W2110621884
JAHLPU010000038
Bacillota
Pseudoflavonifractor sp. MSJ-30 [JAHLPU]
7053
6976
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK